Gene annotation
Transcriptome id Sobic.006G264000.1,Sobic.006G264000.2
Synonym VPS41, ATVAM2, Sb06g032670, ATVPS41, ZIP2, VAM2
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1Z5RFN4 , A0A1Z5RGC2
Pfam PF00637
Panther DB PTHR12616
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT1G08190 : vacuolar protein sorting 41
RAP-DB (Rice) LOC_Os04g11880.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009334
Brachypodium KQJ85257
Barley HORVU2Hr1G120390.8 , HORVU2Hr1G120390.7 , HORVU2Hr1G120390.16 , HORVU2Hr1G120390.28 , HORVU2Hr1G120390.29 , HORVU2Hr1G120390.20 , HORVU2Hr1G120390.21 , HORVU2Hr1G120390.22 , HORVU2Hr1G120390.23 , HORVU2Hr1G120390.24 , HORVU2Hr1G120390.25 , HORVU2Hr1G120390.26 , HORVU2Hr1G120390.27 , HORVU2Hr1G120390.9 , HORVU2Hr1G120390.1 , HORVU2Hr1G120390.3 , HORVU2Hr1G120390.2 , HORVU2Hr1G120390.5 , HORVU2Hr1G120390.4 , HORVU2Hr1G120390.6 , HORVU2Hr1G120390.19 , HORVU2Hr1G120390.18 , HORVU2Hr1G120390.15 , HORVU2Hr1G120390.14 , HORVU2Hr1G120390.17 , HORVU2Hr1G120390.11 , HORVU2Hr1G120390.10 , HORVU2Hr1G120390.13 , HORVU2Hr1G120390.12
Wheat TraesCS2D02G553000 , TraesCS2D02G553000 , TraesCS2B02G583300 , TraesCS2B02G583300 , TraesCS2B02G583300 , TraesCS2B02G583300 , TraesCS2A02G552000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
2 Sobic.001G492300 OsPP2Ac-5 - Phosphatase 2A isoform 5 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
3 Sobic.005G143900 regulator of chromosome condensation, putative, expressed -
4 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
5 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
6 Sobic.006G131000 expressed protein K11968: ariadne-1
7 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
8 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
9 Sobic.003G119700 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
11 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
12 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
13 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
14 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
15 Sobic.001G043100 EMB1745, putative, expressed K18723: nucleoporin GLE1
16 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
17 Sobic.004G322400 WD40-like, putative, expressed -
18 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
19 Sobic.001G226700 WD repeat-containing protein, putative, expressed -
20 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1


Gene co-expression network
sample Sobic006G264000 Sobic006G264000 Sobic006G127600 Sobic006G127600 Sobic006G264000--Sobic006G127600 Sobic001G492300 Sobic001G492300 Sobic006G264000--Sobic001G492300 Sobic005G143900 Sobic005G143900 Sobic006G264000--Sobic005G143900 Sobic007G162100 Sobic007G162100 Sobic006G264000--Sobic007G162100 Sobic008G046500 Sobic008G046500 Sobic006G264000--Sobic008G046500 Sobic006G131000 Sobic006G131000 Sobic006G264000--Sobic006G131000 Sobic008G124900 Sobic008G124900 Sobic006G264000--Sobic008G124900 Sobic004G131800 Sobic004G131800 Sobic006G264000--Sobic004G131800 Sobic003G119700 Sobic003G119700 Sobic006G264000--Sobic003G119700 Sobic006G127600--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic006G127600--Sobic006G261400 Sobic008G157200 Sobic008G157200 Sobic006G127600--Sobic008G157200 Sobic009G256900 Sobic009G256900 Sobic006G127600--Sobic009G256900 Sobic010G000800 Sobic010G000800 Sobic006G127600--Sobic010G000800 Sobic001G251100 Sobic001G251100 Sobic006G127600--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic006G127600--Sobic001G333100 Sobic003G379200 Sobic003G379200 Sobic006G127600--Sobic003G379200 Sobic006G127600--Sobic006G131000 Sobic001G492300--Sobic004G131800 Sobic010G014100 Sobic010G014100 Sobic001G492300--Sobic010G014100 Sobic010G226000 Sobic010G226000 Sobic001G492300--Sobic010G226000 Sobic003G316500 Sobic003G316500 Sobic001G492300--Sobic003G316500 Sobic001G389100 Sobic001G389100 Sobic001G492300--Sobic001G389100 Sobic001G456300 Sobic001G456300 Sobic001G492300--Sobic001G456300 Sobic009G074400 Sobic009G074400 Sobic001G492300--Sobic009G074400 Sobic001G451400 Sobic001G451400 Sobic001G492300--Sobic001G451400 Sobic005G038500 Sobic005G038500 Sobic001G492300--Sobic005G038500 Sobic010G223700 Sobic010G223700 Sobic005G143900--Sobic010G223700 Sobic006G251000 Sobic006G251000 Sobic005G143900--Sobic006G251000 Sobic005G143900--Sobic006G264000 Sobic003G362600 Sobic003G362600 Sobic005G143900--Sobic003G362600 Sobic005G143900--Sobic010G226000 Sobic010G076300 Sobic010G076300 Sobic005G143900--Sobic010G076300 Sobic006G101800 Sobic006G101800 Sobic005G143900--Sobic006G101800 Sobic002G048700 Sobic002G048700 Sobic005G143900--Sobic002G048700 Sobic001G251200 Sobic001G251200 Sobic005G143900--Sobic001G251200 Sobic007G162100--Sobic006G127600 Sobic001G283600 Sobic001G283600 Sobic007G162100--Sobic001G283600 Sobic009G084900 Sobic009G084900 Sobic007G162100--Sobic009G084900 Sobic001G435400 Sobic001G435400 Sobic007G162100--Sobic001G435400 Sobic003G189600 Sobic003G189600 Sobic007G162100--Sobic003G189600 Sobic010G020400 Sobic010G020400 Sobic007G162100--Sobic010G020400 Sobic003G264100 Sobic003G264100 Sobic007G162100--Sobic003G264100 Sobic007G132100 Sobic007G132100 Sobic007G162100--Sobic007G132100 Sobic009G192300 Sobic009G192300 Sobic007G162100--Sobic009G192300 Sobic001G007000 Sobic001G007000 Sobic008G046500--Sobic001G007000 Sobic006G200600 Sobic006G200600 Sobic008G046500--Sobic006G200600 Sobic008G046500--Sobic001G389100 Sobic007G093800 Sobic007G093800 Sobic008G046500--Sobic007G093800 Sobic010G251000 Sobic010G251000 Sobic008G046500--Sobic010G251000 Sobic004G092500 Sobic004G092500 Sobic008G046500--Sobic004G092500 Sobic004G286500 Sobic004G286500 Sobic008G046500--Sobic004G286500 Sobic009G068500 Sobic009G068500 Sobic008G046500--Sobic009G068500 Sobic003G102400 Sobic003G102400 Sobic008G046500--Sobic003G102400 Sobic007G218000 Sobic007G218000 Sobic006G131000--Sobic007G218000 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic004G178200 Sobic004G178200 Sobic006G131000--Sobic004G178200 Sobic008G124900--Sobic007G093800 Sobic008G124900--Sobic003G119700 Sobic006G033200 Sobic006G033200 Sobic008G124900--Sobic006G033200 Sobic008G124900--Sobic001G096000 Sobic010G278200 Sobic010G278200 Sobic008G124900--Sobic010G278200 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic010G249100 Sobic010G249100 Sobic008G124900--Sobic010G249100 Sobic008G124900--Sobic009G068500 Sobic003G176000 Sobic003G176000 Sobic004G131800--Sobic003G176000 Sobic002G211800 Sobic002G211800 Sobic004G131800--Sobic002G211800 Sobic002G170200 Sobic002G170200 Sobic004G131800--Sobic002G170200 Sobic004G131800--Sobic006G127600 Sobic010G032900 Sobic010G032900 Sobic004G131800--Sobic010G032900 Sobic002G344000 Sobic002G344000 Sobic004G131800--Sobic002G344000 Sobic006G056700 Sobic006G056700 Sobic004G131800--Sobic006G056700 Sobic001G178300 Sobic001G178300 Sobic004G131800--Sobic001G178300 Sobic002G294800 Sobic002G294800 Sobic004G131800--Sobic002G294800 Sobic003G119700--Sobic008G124900 Sobic001G294300 Sobic001G294300 Sobic003G119700--Sobic001G294300 Sobic003G119700--Sobic006G131000 Sobic003G119700--Sobic007G093800 Sobic001G441400 Sobic001G441400 Sobic003G119700--Sobic001G441400 Sobic003G119700--Sobic001G096000 Sobic003G119700--Sobic010G278200 Sobic003G119700--Sobic008G046500 Sobic003G119700--Sobic001G451400
Octagon: transcription factors


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