Gene annotation
Transcriptome id Sobic.003G119700.1,Sobic.003G119700.2
Synonym Sb03g010120
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XGF9
Pfam PF13639
Panther DB PTHR31150 PTHR31150:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G75400 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g15630.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035287 , Zm00025a023985
Brachypodium -
Barley HORVU3Hr1G036310.5 , HORVU3Hr1G036310.6 , HORVU3Hr1G036310.7 , HORVU3Hr1G036310.2 , HORVU3Hr1G036310.3 , HORVU3Hr1G036310.8 , HORVU3Hr1G036310.9 , HORVU3Hr1G036310.16 , HORVU3Hr1G036310.17 , HORVU3Hr1G036310.14 , HORVU3Hr1G036310.15 , HORVU3Hr1G036310.12 , HORVU3Hr1G036310.13 , HORVU3Hr1G036310.10 , HORVU3Hr1G036310.11 , HORVU3Hr1G036310.18 , HORVU3Hr1G036310.19 , HORVU3Hr1G036310.4 , HORVU3Hr1G036310.1 , HORVU3Hr1G036310.24 , HORVU3Hr1G036310.23 , HORVU3Hr1G036310.22 , HORVU3Hr1G036310.21 , HORVU3Hr1G036310.20
Wheat TraesCS3B02G208200 , TraesCS3B02G208200 , TraesCS3B02G208200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
2 Sobic.001G294300 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
3 Sobic.006G131000 expressed protein K11968: ariadne-1
4 Sobic.007G093800 expressed protein -
5 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
6 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
7 Sobic.010G278200 expressed protein -
8 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
9 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
10 Sobic.010G235200 oral cancer overexpressed protein 1, putative, expressed -
11 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
12 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
13 Sobic.004G316700 MYB family transcription factor, putative, expressed -
14 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
15 Sobic.010G226000 expressed protein -
16 Sobic.003G273500 expressed protein -
17 Sobic.007G056600 expressed protein -
18 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
19 Sobic.010G275400 expressed protein -
20 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase


Gene co-expression network
sample Sobic003G119700 Sobic003G119700 Sobic008G124900 Sobic008G124900 Sobic003G119700--Sobic008G124900 Sobic001G294300 Sobic001G294300 Sobic003G119700--Sobic001G294300 Sobic006G131000 Sobic006G131000 Sobic003G119700--Sobic006G131000 Sobic007G093800 Sobic007G093800 Sobic003G119700--Sobic007G093800 Sobic001G441400 Sobic001G441400 Sobic003G119700--Sobic001G441400 Sobic001G096000 Sobic001G096000 Sobic003G119700--Sobic001G096000 Sobic010G278200 Sobic010G278200 Sobic003G119700--Sobic010G278200 Sobic008G046500 Sobic008G046500 Sobic003G119700--Sobic008G046500 Sobic001G451400 Sobic001G451400 Sobic003G119700--Sobic001G451400 Sobic008G124900--Sobic007G093800 Sobic008G124900--Sobic003G119700 Sobic006G033200 Sobic006G033200 Sobic008G124900--Sobic006G033200 Sobic008G124900--Sobic001G096000 Sobic008G124900--Sobic010G278200 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic010G249100 Sobic010G249100 Sobic008G124900--Sobic010G249100 Sobic009G068500 Sobic009G068500 Sobic008G124900--Sobic009G068500 Sobic001G294300--Sobic003G119700 Sobic010G235200 Sobic010G235200 Sobic001G294300--Sobic010G235200 Sobic002G056701 Sobic002G056701 Sobic001G294300--Sobic002G056701 Sobic004G316700 Sobic004G316700 Sobic001G294300--Sobic004G316700 Sobic006G219000 Sobic006G219000 Sobic001G294300--Sobic006G219000 Sobic001G294300--Sobic008G124900 Sobic001G294300--Sobic001G441400 Sobic010G275400 Sobic010G275400 Sobic001G294300--Sobic010G275400 Sobic006G281700 Sobic006G281700 Sobic001G294300--Sobic006G281700 Sobic007G218000 Sobic007G218000 Sobic006G131000--Sobic007G218000 Sobic007G132100 Sobic007G132100 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic006G131000--Sobic004G039600 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic004G178200 Sobic004G178200 Sobic006G131000--Sobic004G178200 Sobic007G093800--Sobic008G124900 Sobic007G093800--Sobic006G131000 Sobic007G093800--Sobic004G178200 Sobic007G093800--Sobic009G068500 Sobic007G093800--Sobic008G046500 Sobic007G093800--Sobic010G278200 Sobic003G264100 Sobic003G264100 Sobic007G093800--Sobic003G264100 Sobic004G092500 Sobic004G092500 Sobic007G093800--Sobic004G092500 Sobic007G093800--Sobic007G218000 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic006G252900 Sobic006G252900 Sobic001G441400--Sobic006G252900 Sobic005G027400 Sobic005G027400 Sobic001G441400--Sobic005G027400 Sobic009G165700 Sobic009G165700 Sobic001G441400--Sobic009G165700 Sobic001G363500 Sobic001G363500 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic002G299700 Sobic002G299700 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic001G096000--Sobic006G131000 Sobic001G096000--Sobic008G124900 Sobic006G126100 Sobic006G126100 Sobic001G096000--Sobic006G126100 Sobic003G332500 Sobic003G332500 Sobic001G096000--Sobic003G332500 Sobic001G096000--Sobic003G104000 Sobic003G337300 Sobic003G337300 Sobic001G096000--Sobic003G337300 Sobic001G477700 Sobic001G477700 Sobic001G096000--Sobic001G477700 Sobic001G163400 Sobic001G163400 Sobic001G096000--Sobic001G163400 Sobic001G362200 Sobic001G362200 Sobic001G096000--Sobic001G362200 Sobic010G147100 Sobic010G147100 Sobic010G278200--Sobic010G147100 Sobic009G138100 Sobic009G138100 Sobic010G278200--Sobic009G138100 Sobic010G130000 Sobic010G130000 Sobic010G278200--Sobic010G130000 Sobic001G124200 Sobic001G124200 Sobic010G278200--Sobic001G124200 Sobic010G278200--Sobic006G033200 Sobic005G126600 Sobic005G126600 Sobic010G278200--Sobic005G126600 Sobic003G118200 Sobic003G118200 Sobic010G278200--Sobic003G118200 Sobic003G316500 Sobic003G316500 Sobic010G278200--Sobic003G316500 Sobic010G278200--Sobic008G124900 Sobic001G007000 Sobic001G007000 Sobic008G046500--Sobic001G007000 Sobic006G200600 Sobic006G200600 Sobic008G046500--Sobic006G200600 Sobic001G389100 Sobic001G389100 Sobic008G046500--Sobic001G389100 Sobic008G046500--Sobic007G093800 Sobic010G251000 Sobic010G251000 Sobic008G046500--Sobic010G251000 Sobic008G046500--Sobic004G092500 Sobic004G286500 Sobic004G286500 Sobic008G046500--Sobic004G286500 Sobic008G046500--Sobic009G068500 Sobic008G046500--Sobic003G102400 Sobic007G008900 Sobic007G008900 Sobic001G451400--Sobic007G008900 Sobic001G451400--Sobic009G165700 Sobic001G451400--Sobic001G441400 Sobic001G451400--Sobic001G389100 Sobic010G247800 Sobic010G247800 Sobic001G451400--Sobic010G247800 Sobic001G451400--Sobic003G404500 Sobic010G226000 Sobic010G226000 Sobic001G451400--Sobic010G226000 Sobic001G451400--Sobic005G027400 Sobic003G422500 Sobic003G422500 Sobic001G451400--Sobic003G422500
Octagon: transcription factors


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