Gene annotation
Transcriptome id Sobic.001G092300.1
Synonym
Functional annotation PPR repeat containing protein, expressed
UniProt C6JSL3 , C6JSL7 , A0A1B6QI27
Pfam PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF589
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22670 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g53490.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a008125 , Zm00025a014404
Brachypodium -
Barley HORVU5Hr1G094560.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G444800 expressed protein -
2 Sobic.K028600 expressed protein -
3 Sobic.003G039900 OsFBDUF1 - F-box and DUF domain containing protein, expressed -
4 Sobic.009G251200 expressed protein -
5 Sobic.002G356200 GCN5-related N-acetyltransferase, putative, expressed K14682: amino-acid N-acetyltransferase
6 Sobic.001G376100 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@OsFBX72 - F-box domain containing protein, expressed -
7 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
8 Sobic.001G538800 dual specificity protein phosphatase, putative, expressed -
9 Sobic.002G317400 expressed protein -
10 Sobic.001G376200 auxin response factor, putative, expressed -
11 Sobic.001G373400 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
12 Sobic.005G143900 regulator of chromosome condensation, putative, expressed -
13 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
14 Sobic.004G357100 expressed protein -
15 Sobic.006G281700 DUF803 domain containing, putative, expressed -
16 Sobic.001G094600 pentatricopeptide, putative, expressed -
17 Sobic.007G147400 - -
18 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
19 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
20 Sobic.009G192300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42


Gene co-expression network
sample Sobic001G092300 Sobic001G092300 Sobic003G444800 Sobic003G444800 Sobic001G092300--Sobic003G444800 SobicK028600 SobicK028600 Sobic001G092300--SobicK028600 Sobic003G039900 Sobic003G039900 Sobic001G092300--Sobic003G039900 Sobic009G251200 Sobic009G251200 Sobic001G092300--Sobic009G251200 Sobic002G356200 Sobic002G356200 Sobic001G092300--Sobic002G356200 Sobic001G376100 Sobic001G376100 Sobic001G092300--Sobic001G376100 Sobic009G194000 Sobic009G194000 Sobic001G092300--Sobic009G194000 Sobic001G538800 Sobic001G538800 Sobic001G092300--Sobic001G538800 Sobic002G317400 Sobic002G317400 Sobic001G092300--Sobic002G317400 Sobic003G444800--SobicK028600 Sobic003G059750 Sobic003G059750 Sobic003G444800--Sobic003G059750 Sobic002G103600 Sobic002G103600 Sobic003G444800--Sobic002G103600 Sobic004G357100 Sobic004G357100 Sobic003G444800--Sobic004G357100 Sobic007G042400 Sobic007G042400 Sobic003G444800--Sobic007G042400 Sobic002G112700 Sobic002G112700 Sobic003G444800--Sobic002G112700 Sobic010G279450 Sobic010G279450 Sobic003G444800--Sobic010G279450 Sobic006G234700 Sobic006G234700 Sobic003G444800--Sobic006G234700 Sobic001G376200 Sobic001G376200 Sobic003G444800--Sobic001G376200 SobicK028600--Sobic003G444800 SobicK028600--Sobic004G357100 Sobic001G308400 Sobic001G308400 SobicK028600--Sobic001G308400 SobicK028600--Sobic002G103600 SobicK028600--Sobic007G042400 Sobic006G116100 Sobic006G116100 SobicK028600--Sobic006G116100 Sobic003G043000 Sobic003G043000 SobicK028600--Sobic003G043000 SobicK028600--Sobic006G234700 Sobic002G063900 Sobic002G063900 SobicK028600--Sobic002G063900 Sobic001G141400 Sobic001G141400 Sobic003G039900--Sobic001G141400 Sobic007G147400 Sobic007G147400 Sobic003G039900--Sobic007G147400 Sobic003G039900--Sobic006G234700 Sobic003G039900--Sobic003G444800 Sobic004G111700 Sobic004G111700 Sobic003G039900--Sobic004G111700 Sobic003G039900--Sobic002G103600 Sobic009G228000 Sobic009G228000 Sobic003G039900--Sobic009G228000 Sobic003G039900--Sobic001G376100 Sobic003G039900--Sobic001G376200 Sobic002G298100 Sobic002G298100 Sobic009G251200--Sobic002G298100 Sobic003G133900 Sobic003G133900 Sobic009G251200--Sobic003G133900 Sobic005G160100 Sobic005G160100 Sobic009G251200--Sobic005G160100 Sobic001G081000 Sobic001G081000 Sobic009G251200--Sobic001G081000 Sobic006G226300 Sobic006G226300 Sobic009G251200--Sobic006G226300 Sobic004G309900 Sobic004G309900 Sobic009G251200--Sobic004G309900 Sobic006G185200 Sobic006G185200 Sobic009G251200--Sobic006G185200 Sobic001G393900 Sobic001G393900 Sobic009G251200--Sobic001G393900 Sobic008G014500 Sobic008G014500 Sobic009G251200--Sobic008G014500 Sobic005G026400 Sobic005G026400 Sobic002G356200--Sobic005G026400 Sobic009G192300 Sobic009G192300 Sobic002G356200--Sobic009G192300 Sobic002G356200--Sobic006G234700 Sobic001G340300 Sobic001G340300 Sobic002G356200--Sobic001G340300 Sobic002G356200--Sobic009G251200 Sobic002G356200--Sobic009G194000 Sobic006G155100 Sobic006G155100 Sobic002G356200--Sobic006G155100 Sobic003G012000 Sobic003G012000 Sobic002G356200--Sobic003G012000 Sobic002G292800 Sobic002G292800 Sobic002G356200--Sobic002G292800 Sobic001G376100--Sobic003G444800 Sobic001G376100--Sobic002G103600 Sobic001G376100--Sobic002G112700 Sobic001G376100--Sobic006G234700 Sobic007G008900 Sobic007G008900 Sobic001G376100--Sobic007G008900 Sobic009G247400 Sobic009G247400 Sobic001G376100--Sobic009G247400 Sobic001G114000 Sobic001G114000 Sobic001G376100--Sobic001G114000 Sobic010G247800 Sobic010G247800 Sobic001G376100--Sobic010G247800 Sobic002G408200 Sobic002G408200 Sobic001G376100--Sobic002G408200 Sobic003G181700 Sobic003G181700 Sobic009G194000--Sobic003G181700 Sobic003G021600 Sobic003G021600 Sobic009G194000--Sobic003G021600 Sobic001G490900 Sobic001G490900 Sobic009G194000--Sobic001G490900 Sobic010G169900 Sobic010G169900 Sobic009G194000--Sobic010G169900 Sobic004G122900 Sobic004G122900 Sobic009G194000--Sobic004G122900 Sobic009G194000--Sobic001G308400 Sobic003G190200 Sobic003G190200 Sobic009G194000--Sobic003G190200 Sobic006G060000 Sobic006G060000 Sobic009G194000--Sobic006G060000 Sobic009G194000--Sobic001G141400 Sobic008G081600 Sobic008G081600 Sobic001G538800--Sobic008G081600 Sobic001G538800--Sobic001G092300 Sobic006G089400 Sobic006G089400 Sobic001G538800--Sobic006G089400 Sobic010G143500 Sobic010G143500 Sobic001G538800--Sobic010G143500 Sobic006G078600 Sobic006G078600 Sobic001G538800--Sobic006G078600 Sobic001G538800--Sobic002G298100 Sobic001G538800--Sobic009G251200 Sobic005G064700 Sobic005G064700 Sobic001G538800--Sobic005G064700 Sobic010G035801 Sobic010G035801 Sobic001G538800--Sobic010G035801 Sobic002G317400--Sobic007G147400 Sobic008G149800 Sobic008G149800 Sobic002G317400--Sobic008G149800 Sobic002G317400--SobicK028600 Sobic002G317400--Sobic002G103600 Sobic009G102000 Sobic009G102000 Sobic002G317400--Sobic009G102000 Sobic002G317400--Sobic003G444800 Sobic002G317400--Sobic002G063900 Sobic002G278000 Sobic002G278000 Sobic002G317400--Sobic002G278000 Sobic002G317400--Sobic003G039900
Octagon: transcription factors


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