Gene annotation
Transcriptome id Sobic.002G317400.10,Sobic.002G317400.8,Sobic.002G317400.14,Sobic.002G317400.11,Sobic.002G317400.13,Sobic.002G317400.7,Sobic.002G317400.12,Sobic.002G317400.15,Sobic.002G317400.6,Sobic.002G317400.9,Sobic.002G317400.3
Synonym Sb02g034650
Functional annotation expressed protein
UniProt A0A1W0W6N7 , A0A1B6QEI5 , A0A1W0W6N9 , A0A1W0W6I0 , A0A1B6QEJ0 , A0A1W0W6H1
Pfam PF00076
Panther DB PTHR15241 PTHR15241:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G07350 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os01g26940.1,ChrUn.fgenesh.mRNA.76 : expressed protein,transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a014773
Brachypodium KQK16015 , KQK16013 , KQK16012 , PNT75019 , PNT75018
Barley -
Wheat TraesCS2D02G229000 , TraesCS2D02G229000 , TraesCS2D02G229000 , TraesCS2D02G229000 , TraesCS2D02G229000 , TraesCS2D02G229000 , TraesCS2D02G229000 , TraesCS2D02G229000 , TraesCS2B02G248600 , TraesCS2B02G248600 , TraesCS2B02G248600 , TraesCS2B02G248600 , TraesCS2B02G248600 , TraesCS2B02G248600 , TraesCS2B02G248600 , TraesCS2A02G223000 , TraesCS2A02G223000 , TraesCS2A02G223000 , TraesCS2A02G223000 , TraesCS2A02G223000 , TraesCS2A02G223000 , TraesCS2A02G223000 , TraesCS2A02G223000 , TraesCS2D02G229000 , TraesCS2D02G229000
Populus -


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cDNA sequences
Sobic.002G317400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G147400 - -
2 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
3 Sobic.K028600 expressed protein -
4 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
5 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
6 Sobic.003G444800 expressed protein -
7 Sobic.002G063900 zinc ion binding protein, putative, expressed -
8 Sobic.002G278000 endonuclease/exonuclease/phosphatase family protein, putative, expressed K10772: AP endonuclease 2
9 Sobic.003G039900 OsFBDUF1 - F-box and DUF domain containing protein, expressed -
10 Sobic.002G147100 esterase/lipase/thioesterase, putative, expressed -
11 Sobic.004G357100 expressed protein -
12 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
13 Sobic.002G357700 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
14 Sobic.003G398400 expressed protein -
15 Sobic.004G218300 Zinc finger, ZZ type domain containing protein, expressed -
16 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
17 Sobic.005G138300 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
18 Sobic.001G376100 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@OsFBX72 - F-box domain containing protein, expressed -
19 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
20 Sobic.008G152900 MATH domain containing protein, expressed -


Gene co-expression network
sample Sobic002G317400 Sobic002G317400 Sobic007G147400 Sobic007G147400 Sobic002G317400--Sobic007G147400 Sobic008G149800 Sobic008G149800 Sobic002G317400--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G317400--SobicK028600 Sobic002G103600 Sobic002G103600 Sobic002G317400--Sobic002G103600 Sobic009G102000 Sobic009G102000 Sobic002G317400--Sobic009G102000 Sobic003G444800 Sobic003G444800 Sobic002G317400--Sobic003G444800 Sobic002G063900 Sobic002G063900 Sobic002G317400--Sobic002G063900 Sobic002G278000 Sobic002G278000 Sobic002G317400--Sobic002G278000 Sobic003G039900 Sobic003G039900 Sobic002G317400--Sobic003G039900 Sobic007G147400--SobicK028600 Sobic007G147400--Sobic002G063900 Sobic007G147400--Sobic002G317400 Sobic007G147400--Sobic003G444800 Sobic001G376200 Sobic001G376200 Sobic007G147400--Sobic001G376200 Sobic002G147100 Sobic002G147100 Sobic007G147400--Sobic002G147100 Sobic007G147400--Sobic002G103600 Sobic007G147400--Sobic003G039900 Sobic002G357700 Sobic002G357700 Sobic007G147400--Sobic002G357700 Sobic006G116100 Sobic006G116100 Sobic008G149800--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic008G149800--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic008G149800--Sobic007G061700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic004G246100 Sobic004G246100 Sobic008G149800--Sobic004G246100 Sobic002G158700 Sobic002G158700 Sobic008G149800--Sobic002G158700 Sobic005G154500 Sobic005G154500 Sobic008G149800--Sobic005G154500 Sobic001G155000 Sobic001G155000 Sobic008G149800--Sobic001G155000 SobicK028600--Sobic003G444800 Sobic004G357100 Sobic004G357100 SobicK028600--Sobic004G357100 Sobic001G308400 Sobic001G308400 SobicK028600--Sobic001G308400 SobicK028600--Sobic002G103600 Sobic007G042400 Sobic007G042400 SobicK028600--Sobic007G042400 SobicK028600--Sobic006G116100 Sobic003G043000 Sobic003G043000 SobicK028600--Sobic003G043000 Sobic006G234700 Sobic006G234700 SobicK028600--Sobic006G234700 SobicK028600--Sobic002G063900 Sobic002G103600--Sobic003G444800 Sobic005G013200 Sobic005G013200 Sobic002G103600--Sobic005G013200 Sobic002G103600--SobicK028600 Sobic003G059750 Sobic003G059750 Sobic002G103600--Sobic003G059750 Sobic001G311500 Sobic001G311500 Sobic002G103600--Sobic001G311500 Sobic009G247400 Sobic009G247400 Sobic002G103600--Sobic009G247400 Sobic002G408200 Sobic002G408200 Sobic002G103600--Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic002G103600--Sobic008G028700 Sobic002G103600--Sobic007G042400 Sobic009G102000--Sobic008G149800 Sobic009G102000--Sobic002G317400 Sobic009G040800 Sobic009G040800 Sobic009G102000--Sobic009G040800 Sobic004G122900 Sobic004G122900 Sobic009G102000--Sobic004G122900 Sobic009G102000--Sobic002G147100 Sobic009G102000--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic009G102000--Sobic009G129600 Sobic009G102000--Sobic007G147400 Sobic003G299500 Sobic003G299500 Sobic009G102000--Sobic003G299500 Sobic003G444800--SobicK028600 Sobic003G444800--Sobic003G059750 Sobic003G444800--Sobic002G103600 Sobic003G444800--Sobic004G357100 Sobic003G444800--Sobic007G042400 Sobic002G112700 Sobic002G112700 Sobic003G444800--Sobic002G112700 Sobic010G279450 Sobic010G279450 Sobic003G444800--Sobic010G279450 Sobic003G444800--Sobic006G234700 Sobic003G444800--Sobic001G376200 Sobic008G173100 Sobic008G173100 Sobic002G063900--Sobic008G173100 Sobic002G063900--Sobic006G116100 Sobic002G063900--Sobic004G357100 Sobic002G260400 Sobic002G260400 Sobic002G063900--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic002G063900--Sobic007G090430 Sobic002G063900--Sobic004G246100 Sobic002G063900--Sobic002G278000 Sobic002G063900--Sobic008G149800 Sobic002G063900--SobicK028600 Sobic002G278000--Sobic002G063900 Sobic002G278000--Sobic006G116100 Sobic002G278000--Sobic005G013200 Sobic001G511500 Sobic001G511500 Sobic002G278000--Sobic001G511500 Sobic002G278000--Sobic008G149800 Sobic005G015900 Sobic005G015900 Sobic002G278000--Sobic005G015900 Sobic002G278000--Sobic008G028700 Sobic002G278000--Sobic008G173100 Sobic001G167200 Sobic001G167200 Sobic002G278000--Sobic001G167200 Sobic001G141400 Sobic001G141400 Sobic003G039900--Sobic001G141400 Sobic003G039900--Sobic007G147400 Sobic003G039900--Sobic006G234700 Sobic003G039900--Sobic003G444800 Sobic004G111700 Sobic004G111700 Sobic003G039900--Sobic004G111700 Sobic003G039900--Sobic002G103600 Sobic009G228000 Sobic009G228000 Sobic003G039900--Sobic009G228000 Sobic001G376100 Sobic001G376100 Sobic003G039900--Sobic001G376100 Sobic003G039900--Sobic001G376200
Octagon: transcription factors


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