Gene annotation
Transcriptome id Sobic.003G039900.4,Sobic.003G039900.5,Sobic.003G039900.3,Sobic.003G039900.6
Synonym Sb03g003560
Functional annotation OsFBDUF1 - F-box and DUF domain containing protein, expressed
UniProt A0A1B6Q180 , A0A1B6Q166
Pfam PF00646 PF03478
Panther DB PTHR11102 PTHR11102:SF74
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G05970 : F-box family protein with a domain of unknown function (DUF295)
RAP-DB (Rice) LOC_Os01g08830.1 : OsFBDUF1 - F-box and DUF domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023146
Brachypodium -
Barley -
Wheat TraesCS3B02G133000 , TraesCS3D02G115900
Populus -


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cDNA sequences
Sobic.003G039900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
2 Sobic.007G147400 - -
3 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
4 Sobic.003G444800 expressed protein -
5 Sobic.004G111700 tyrosine-protein phosphatase YVH1, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
6 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
7 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
8 Sobic.001G376100 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@OsFBX72 - F-box domain containing protein, expressed -
9 Sobic.001G376200 auxin response factor, putative, expressed -
10 Sobic.K028600 expressed protein -
11 Sobic.002G317400 expressed protein -
12 Sobic.006G215900 OsFBX172 - F-box domain containing protein, expressed -
13 Sobic.005G138300 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
14 Sobic.007G103600 protein of unknown function DUF1296 domain containing protein, expressed -
15 Sobic.004G357100 expressed protein -
16 Sobic.002G260400 - -
17 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
18 Sobic.003G243800 - -
19 Sobic.002G063900 zinc ion binding protein, putative, expressed -
20 Sobic.001G332700 pentatricopeptide repeat protein PPR986-12, putative, expressed -


Gene co-expression network
sample Sobic003G039900 Sobic003G039900 Sobic001G141400 Sobic001G141400 Sobic003G039900--Sobic001G141400 Sobic007G147400 Sobic007G147400 Sobic003G039900--Sobic007G147400 Sobic006G234700 Sobic006G234700 Sobic003G039900--Sobic006G234700 Sobic003G444800 Sobic003G444800 Sobic003G039900--Sobic003G444800 Sobic004G111700 Sobic004G111700 Sobic003G039900--Sobic004G111700 Sobic002G103600 Sobic002G103600 Sobic003G039900--Sobic002G103600 Sobic009G228000 Sobic009G228000 Sobic003G039900--Sobic009G228000 Sobic001G376100 Sobic001G376100 Sobic003G039900--Sobic001G376100 Sobic001G376200 Sobic001G376200 Sobic003G039900--Sobic001G376200 Sobic001G475300 Sobic001G475300 Sobic001G141400--Sobic001G475300 Sobic009G252300 Sobic009G252300 Sobic001G141400--Sobic009G252300 Sobic003G250400 Sobic003G250400 Sobic001G141400--Sobic003G250400 Sobic009G194000 Sobic009G194000 Sobic001G141400--Sobic009G194000 Sobic003G190200 Sobic003G190200 Sobic001G141400--Sobic003G190200 Sobic007G172700 Sobic007G172700 Sobic001G141400--Sobic007G172700 Sobic001G490900 Sobic001G490900 Sobic001G141400--Sobic001G490900 Sobic002G200000 Sobic002G200000 Sobic001G141400--Sobic002G200000 Sobic001G141400--Sobic003G039900 SobicK028600 SobicK028600 Sobic007G147400--SobicK028600 Sobic002G063900 Sobic002G063900 Sobic007G147400--Sobic002G063900 Sobic002G317400 Sobic002G317400 Sobic007G147400--Sobic002G317400 Sobic007G147400--Sobic003G444800 Sobic007G147400--Sobic001G376200 Sobic002G147100 Sobic002G147100 Sobic007G147400--Sobic002G147100 Sobic007G147400--Sobic002G103600 Sobic007G147400--Sobic003G039900 Sobic002G357700 Sobic002G357700 Sobic007G147400--Sobic002G357700 Sobic004G096400 Sobic004G096400 Sobic006G234700--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic006G234700--Sobic010G059500 Sobic009G192300 Sobic009G192300 Sobic006G234700--Sobic009G192300 Sobic007G042400 Sobic007G042400 Sobic006G234700--Sobic007G042400 Sobic006G234700--Sobic003G444800 Sobic001G493200 Sobic001G493200 Sobic006G234700--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic006G234700--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic006G234700--Sobic001G433800 Sobic002G083500 Sobic002G083500 Sobic006G234700--Sobic002G083500 Sobic003G444800--SobicK028600 Sobic003G059750 Sobic003G059750 Sobic003G444800--Sobic003G059750 Sobic003G444800--Sobic002G103600 Sobic004G357100 Sobic004G357100 Sobic003G444800--Sobic004G357100 Sobic003G444800--Sobic007G042400 Sobic002G112700 Sobic002G112700 Sobic003G444800--Sobic002G112700 Sobic010G279450 Sobic010G279450 Sobic003G444800--Sobic010G279450 Sobic003G444800--Sobic006G234700 Sobic003G444800--Sobic001G376200 Sobic006G186400 Sobic006G186400 Sobic004G111700--Sobic006G186400 Sobic002G260400 Sobic002G260400 Sobic004G111700--Sobic002G260400 Sobic004G111700--Sobic003G039900 Sobic004G111700--Sobic002G103600 Sobic001G066300 Sobic001G066300 Sobic004G111700--Sobic001G066300 Sobic007G103600 Sobic007G103600 Sobic004G111700--Sobic007G103600 Sobic006G215900 Sobic006G215900 Sobic004G111700--Sobic006G215900 Sobic007G090430 Sobic007G090430 Sobic004G111700--Sobic007G090430 Sobic010G166400 Sobic010G166400 Sobic004G111700--Sobic010G166400 Sobic002G103600--Sobic003G444800 Sobic005G013200 Sobic005G013200 Sobic002G103600--Sobic005G013200 Sobic002G103600--SobicK028600 Sobic002G103600--Sobic003G059750 Sobic001G311500 Sobic001G311500 Sobic002G103600--Sobic001G311500 Sobic009G247400 Sobic009G247400 Sobic002G103600--Sobic009G247400 Sobic002G408200 Sobic002G408200 Sobic002G103600--Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic002G103600--Sobic008G028700 Sobic002G103600--Sobic007G042400 Sobic009G107300 Sobic009G107300 Sobic009G228000--Sobic009G107300 Sobic003G043000 Sobic003G043000 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic003G241700 Sobic003G241700 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic004G209700 Sobic004G209700 Sobic009G228000--Sobic004G209700 Sobic009G228000--Sobic006G234700 Sobic001G376100--Sobic003G444800 Sobic001G376100--Sobic002G103600 Sobic001G376100--Sobic002G112700 Sobic001G376100--Sobic006G234700 Sobic007G008900 Sobic007G008900 Sobic001G376100--Sobic007G008900 Sobic001G376100--Sobic009G247400 Sobic001G114000 Sobic001G114000 Sobic001G376100--Sobic001G114000 Sobic010G247800 Sobic010G247800 Sobic001G376100--Sobic010G247800 Sobic001G376100--Sobic002G408200 Sobic001G376200--Sobic003G444800 Sobic002G016200 Sobic002G016200 Sobic001G376200--Sobic002G016200 Sobic001G376200--SobicK028600 Sobic001G376200--Sobic007G147400 Sobic001G376200--Sobic009G192300 Sobic001G308400 Sobic001G308400 Sobic001G376200--Sobic001G308400 Sobic010G169900 Sobic010G169900 Sobic001G376200--Sobic010G169900 Sobic010G226000 Sobic010G226000 Sobic001G376200--Sobic010G226000 Sobic001G376200--Sobic002G103600
Octagon: transcription factors


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