Gene annotation
Transcriptome id Sobic.004G111700.1,Sobic.004G111700.2,Sobic.004G111700.4,Sobic.004G111700.3
Synonym Sb04g009140
Functional annotation tyrosine-protein phosphatase YVH1, putative, expressed
UniProt A0A1Z5RLV0 , C5XZ50
Pfam -
Panther DB PTHR10159 PTHR10159:SF335
NCBI CDD -
KEGG Orthology K14819; DUSP12, dual specificity phosphatase 12
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18593 : dual specificity protein phosphatase-related
RAP-DB (Rice) LOC_Os02g15270.1 : tyrosine-protein phosphatase YVH1, putative, expressed
MaizeGDB (Corn) Zm00025a034441
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
2 Sobic.002G260400 - -
3 Sobic.003G039900 OsFBDUF1 - F-box and DUF domain containing protein, expressed -
4 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
5 Sobic.001G066300 cell cycle control protein, putative, expressed -
6 Sobic.007G103600 protein of unknown function DUF1296 domain containing protein, expressed -
7 Sobic.006G215900 OsFBX172 - F-box domain containing protein, expressed -
8 Sobic.007G090430 - -
9 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
10 Sobic.002G063900 zinc ion binding protein, putative, expressed -
11 Sobic.005G138300 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
12 Sobic.008G153000 MATH domain containing protein, expressed -
13 Sobic.007G017800 OsFBX142 - F-box domain containing protein, expressed -
14 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
15 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
16 Sobic.001G169600 F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed -
17 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
18 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
19 Sobic.001G332700 pentatricopeptide repeat protein PPR986-12, putative, expressed -
20 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein


Gene co-expression network
sample Sobic004G111700 Sobic004G111700 Sobic006G186400 Sobic006G186400 Sobic004G111700--Sobic006G186400 Sobic002G260400 Sobic002G260400 Sobic004G111700--Sobic002G260400 Sobic003G039900 Sobic003G039900 Sobic004G111700--Sobic003G039900 Sobic002G103600 Sobic002G103600 Sobic004G111700--Sobic002G103600 Sobic001G066300 Sobic001G066300 Sobic004G111700--Sobic001G066300 Sobic007G103600 Sobic007G103600 Sobic004G111700--Sobic007G103600 Sobic006G215900 Sobic006G215900 Sobic004G111700--Sobic006G215900 Sobic007G090430 Sobic007G090430 Sobic004G111700--Sobic007G090430 Sobic010G166400 Sobic010G166400 Sobic004G111700--Sobic010G166400 Sobic008G153000 Sobic008G153000 Sobic006G186400--Sobic008G153000 Sobic001G176200 Sobic001G176200 Sobic006G186400--Sobic001G176200 Sobic004G067700 Sobic004G067700 Sobic006G186400--Sobic004G067700 Sobic008G173100 Sobic008G173100 Sobic006G186400--Sobic008G173100 Sobic007G056500 Sobic007G056500 Sobic006G186400--Sobic007G056500 Sobic006G186400--Sobic002G260400 Sobic006G046700 Sobic006G046700 Sobic006G186400--Sobic006G046700 Sobic003G073000 Sobic003G073000 Sobic006G186400--Sobic003G073000 Sobic001G408700 Sobic001G408700 Sobic006G186400--Sobic001G408700 Sobic002G260400--Sobic008G173100 Sobic002G056701 Sobic002G056701 Sobic002G260400--Sobic002G056701 Sobic002G063900 Sobic002G063900 Sobic002G260400--Sobic002G063900 Sobic002G370900 Sobic002G370900 Sobic002G260400--Sobic002G370900 Sobic006G116100 Sobic006G116100 Sobic002G260400--Sobic006G116100 Sobic002G260400--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G260400--Sobic010G236400 Sobic002G083500 Sobic002G083500 Sobic002G260400--Sobic002G083500 Sobic010G245000 Sobic010G245000 Sobic002G260400--Sobic010G245000 Sobic001G141400 Sobic001G141400 Sobic003G039900--Sobic001G141400 Sobic007G147400 Sobic007G147400 Sobic003G039900--Sobic007G147400 Sobic006G234700 Sobic006G234700 Sobic003G039900--Sobic006G234700 Sobic003G444800 Sobic003G444800 Sobic003G039900--Sobic003G444800 Sobic003G039900--Sobic004G111700 Sobic003G039900--Sobic002G103600 Sobic009G228000 Sobic009G228000 Sobic003G039900--Sobic009G228000 Sobic001G376100 Sobic001G376100 Sobic003G039900--Sobic001G376100 Sobic001G376200 Sobic001G376200 Sobic003G039900--Sobic001G376200 Sobic002G103600--Sobic003G444800 Sobic005G013200 Sobic005G013200 Sobic002G103600--Sobic005G013200 SobicK028600 SobicK028600 Sobic002G103600--SobicK028600 Sobic003G059750 Sobic003G059750 Sobic002G103600--Sobic003G059750 Sobic001G311500 Sobic001G311500 Sobic002G103600--Sobic001G311500 Sobic009G247400 Sobic009G247400 Sobic002G103600--Sobic009G247400 Sobic002G408200 Sobic002G408200 Sobic002G103600--Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic002G103600--Sobic008G028700 Sobic007G042400 Sobic007G042400 Sobic002G103600--Sobic007G042400 Sobic001G066300--Sobic008G173100 Sobic001G066300--Sobic006G186400 Sobic001G026200 Sobic001G026200 Sobic001G066300--Sobic001G026200 Sobic001G066300--Sobic007G090430 Sobic001G066300--Sobic007G056500 Sobic001G398800 Sobic001G398800 Sobic001G066300--Sobic001G398800 Sobic002G071500 Sobic002G071500 Sobic001G066300--Sobic002G071500 Sobic002G264200 Sobic002G264200 Sobic001G066300--Sobic002G264200 Sobic001G066300--Sobic002G063900 Sobic007G103600--Sobic003G059750 Sobic005G207500 Sobic005G207500 Sobic007G103600--Sobic005G207500 Sobic005G118600 Sobic005G118600 Sobic007G103600--Sobic005G118600 Sobic007G103600--Sobic003G444800 Sobic007G103600--Sobic002G071500 Sobic007G103600--Sobic008G153000 Sobic003G119000 Sobic003G119000 Sobic007G103600--Sobic003G119000 Sobic007G103600--Sobic002G264200 Sobic006G032500 Sobic006G032500 Sobic007G103600--Sobic006G032500 Sobic004G219100 Sobic004G219100 Sobic006G215900--Sobic004G219100 Sobic006G215900--Sobic004G067700 Sobic002G158700 Sobic002G158700 Sobic006G215900--Sobic002G158700 Sobic001G106100 Sobic001G106100 Sobic006G215900--Sobic001G106100 Sobic006G215900--Sobic004G111700 Sobic006G215900--Sobic002G103600 Sobic006G215900--Sobic003G039900 Sobic006G215900--Sobic001G376100 Sobic008G149800 Sobic008G149800 Sobic006G215900--Sobic008G149800 Sobic007G090430--Sobic008G173100 Sobic009G177500 Sobic009G177500 Sobic007G090430--Sobic009G177500 Sobic001G384300 Sobic001G384300 Sobic007G090430--Sobic001G384300 Sobic009G260500 Sobic009G260500 Sobic007G090430--Sobic009G260500 Sobic007G090430--Sobic002G063900 Sobic007G090430--Sobic001G398800 Sobic004G048800 Sobic004G048800 Sobic007G090430--Sobic004G048800 Sobic007G090430--Sobic005G207500 Sobic002G317200 Sobic002G317200 Sobic007G090430--Sobic002G317200 Sobic008G014500 Sobic008G014500 Sobic010G166400--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic010G166400--Sobic010G116600 Sobic010G059500 Sobic010G059500 Sobic010G166400--Sobic010G059500 Sobic007G207200 Sobic007G207200 Sobic010G166400--Sobic007G207200 Sobic003G093800 Sobic003G093800 Sobic010G166400--Sobic003G093800 Sobic010G166400--Sobic007G042400 Sobic010G166400--Sobic002G317200 Sobic010G166400--Sobic009G177500 Sobic009G084900 Sobic009G084900 Sobic010G166400--Sobic009G084900
Octagon: transcription factors


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