Gene annotation
Transcriptome id Sobic.001G169600.2
Synonym HOS15, Sb01g014830
Functional annotation F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed
UniProt A0A1Z5S6L8
Pfam PF08513
Panther DB PTHR22846 PTHR22846:SF41
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G67320 : WD-40 repeat family protein
RAP-DB (Rice) LOC_Os07g22220.1 : F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed
MaizeGDB (Corn) Zm00025a007428 , Zm00025a007429
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G169600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
2 Sobic.007G017800 OsFBX142 - F-box domain containing protein, expressed -
3 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
4 Sobic.007G189000 WTG1(Ortholog in rice:Wang et al. (2017))(PubMedID : 31659909)@ubiquitin thioesterase otubain-like, putative, expressed K09602: ubiquitin thioesterase protein OTUB1
5 Sobic.001G405600 basic helix-loop-helix, putative, expressed K10863: aprataxin
6 Sobic.004G111700 tyrosine-protein phosphatase YVH1, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
7 Sobic.003G143200 expressed protein -
8 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
9 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
10 Sobic.001G216100 expressed protein -
11 Sobic.002G260400 - -
12 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
13 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
14 Sobic.004G028100 expressed protein -
15 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
16 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
17 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
18 Sobic.007G105900 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed -
19 Sobic.001G207500 ZOS10-06 - C2H2 zinc finger protein, expressed K15685: E3 ubiquitin-protein ligase Hakai
20 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor


Gene co-expression network
sample Sobic001G169600 Sobic001G169600 Sobic009G124700 Sobic009G124700 Sobic001G169600--Sobic009G124700 Sobic007G017800 Sobic007G017800 Sobic001G169600--Sobic007G017800 Sobic007G075900 Sobic007G075900 Sobic001G169600--Sobic007G075900 Sobic007G189000 Sobic007G189000 Sobic001G169600--Sobic007G189000 Sobic001G405600 Sobic001G405600 Sobic001G169600--Sobic001G405600 Sobic004G111700 Sobic004G111700 Sobic001G169600--Sobic004G111700 Sobic003G143200 Sobic003G143200 Sobic001G169600--Sobic003G143200 Sobic008G063300 Sobic008G063300 Sobic001G169600--Sobic008G063300 Sobic005G160400 Sobic005G160400 Sobic001G169600--Sobic005G160400 Sobic007G218000 Sobic007G218000 Sobic009G124700--Sobic007G218000 Sobic009G044800 Sobic009G044800 Sobic009G124700--Sobic009G044800 Sobic003G443100 Sobic003G443100 Sobic009G124700--Sobic003G443100 Sobic009G177500 Sobic009G177500 Sobic009G124700--Sobic009G177500 Sobic009G124700--Sobic007G075900 Sobic003G118200 Sobic003G118200 Sobic009G124700--Sobic003G118200 Sobic001G441400 Sobic001G441400 Sobic009G124700--Sobic001G441400 Sobic007G132100 Sobic007G132100 Sobic009G124700--Sobic007G132100 Sobic005G138300 Sobic005G138300 Sobic009G124700--Sobic005G138300 Sobic007G017800--Sobic001G405600 Sobic002G103600 Sobic002G103600 Sobic007G017800--Sobic002G103600 Sobic007G017800--Sobic003G143200 Sobic004G185800 Sobic004G185800 Sobic007G017800--Sobic004G185800 Sobic010G034100 Sobic010G034100 Sobic007G017800--Sobic010G034100 Sobic008G162900 Sobic008G162900 Sobic007G017800--Sobic008G162900 Sobic007G017800--Sobic009G177500 Sobic006G234700 Sobic006G234700 Sobic007G017800--Sobic006G234700 Sobic007G017800--Sobic008G063300 Sobic004G353200 Sobic004G353200 Sobic007G075900--Sobic004G353200 Sobic001G392300 Sobic001G392300 Sobic007G075900--Sobic001G392300 Sobic007G075900--Sobic009G177500 Sobic007G075900--Sobic009G044800 Sobic008G014500 Sobic008G014500 Sobic007G075900--Sobic008G014500 Sobic004G274200 Sobic004G274200 Sobic007G075900--Sobic004G274200 Sobic003G401100 Sobic003G401100 Sobic007G075900--Sobic003G401100 Sobic004G084300 Sobic004G084300 Sobic007G075900--Sobic004G084300 Sobic007G075900--Sobic009G124700 Sobic007G056500 Sobic007G056500 Sobic007G189000--Sobic007G056500 Sobic007G105900 Sobic007G105900 Sobic007G189000--Sobic007G105900 Sobic007G189000--Sobic009G124700 Sobic007G189000--Sobic001G169600 Sobic001G106100 Sobic001G106100 Sobic007G189000--Sobic001G106100 Sobic002G347000 Sobic002G347000 Sobic007G189000--Sobic002G347000 Sobic006G219000 Sobic006G219000 Sobic007G189000--Sobic006G219000 Sobic009G224000 Sobic009G224000 Sobic007G189000--Sobic009G224000 Sobic009G160600 Sobic009G160600 Sobic007G189000--Sobic009G160600 Sobic001G405600--Sobic007G017800 Sobic001G405600--Sobic010G034100 Sobic001G405600--Sobic007G105900 Sobic010G059500 Sobic010G059500 Sobic001G405600--Sobic010G059500 Sobic001G405600--Sobic003G143200 Sobic001G405600--Sobic006G234700 Sobic006G039400 Sobic006G039400 Sobic001G405600--Sobic006G039400 Sobic003G296900 Sobic003G296900 Sobic001G405600--Sobic003G296900 Sobic001G035200 Sobic001G035200 Sobic001G405600--Sobic001G035200 Sobic006G186400 Sobic006G186400 Sobic004G111700--Sobic006G186400 Sobic002G260400 Sobic002G260400 Sobic004G111700--Sobic002G260400 Sobic003G039900 Sobic003G039900 Sobic004G111700--Sobic003G039900 Sobic004G111700--Sobic002G103600 Sobic001G066300 Sobic001G066300 Sobic004G111700--Sobic001G066300 Sobic007G103600 Sobic007G103600 Sobic004G111700--Sobic007G103600 Sobic006G215900 Sobic006G215900 Sobic004G111700--Sobic006G215900 Sobic007G090430 Sobic007G090430 Sobic004G111700--Sobic007G090430 Sobic010G166400 Sobic010G166400 Sobic004G111700--Sobic010G166400 Sobic004G092500 Sobic004G092500 Sobic003G143200--Sobic004G092500 Sobic003G143200--Sobic001G405600 Sobic003G143200--Sobic007G017800 Sobic003G143200--Sobic002G347000 Sobic003G143200--Sobic007G132100 Sobic003G143200--Sobic003G443100 Sobic003G143200--Sobic005G138300 Sobic007G125000 Sobic007G125000 Sobic003G143200--Sobic007G125000 Sobic003G143200--Sobic002G260400 Sobic004G140600 Sobic004G140600 Sobic008G063300--Sobic004G140600 Sobic001G433800 Sobic001G433800 Sobic008G063300--Sobic001G433800 Sobic006G096900 Sobic006G096900 Sobic008G063300--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic008G063300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic008G063300--Sobic003G095900 Sobic010G123600 Sobic010G123600 Sobic008G063300--Sobic010G123600 Sobic003G188400 Sobic003G188400 Sobic008G063300--Sobic003G188400 Sobic008G063300--Sobic009G177500 Sobic008G063300--Sobic010G059500 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic007G084100 Sobic007G084100 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500
Octagon: transcription factors


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