Gene annotation
Transcriptome id Sobic.001G066300.1,Sobic.001G066300.2
Synonym Sb01g006030
Functional annotation cell cycle control protein, putative, expressed
UniProt A0A1B6QHN8 , A0A1B6QHL0
Pfam PF03381
Panther DB PTHR10926 PTHR10926:SF29
NCBI CDD KOG2952; Cell cycle control protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G79450 : ALA-interacting subunit 5,LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
RAP-DB (Rice) LOC_Os03g57170.3,LOC_Os03g57170.2 : cell cycle control protein, putative, expressed
MaizeGDB (Corn) Zm00025a008465
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
2 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
3 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
4 Sobic.007G090430 - -
5 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
6 Sobic.001G398800 FHA domain containing protein, putative, expressed -
7 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
8 Sobic.002G264200 RNA recognition motif containing protein, expressed -
9 Sobic.002G063900 zinc ion binding protein, putative, expressed -
10 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
11 Sobic.002G260400 - -
12 Sobic.007G091600 proline rich protein 3, putative, expressed -
13 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
14 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
15 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
16 Sobic.004G111700 tyrosine-protein phosphatase YVH1, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
17 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
18 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.001G010300 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G066300 Sobic001G066300 Sobic008G173100 Sobic008G173100 Sobic001G066300--Sobic008G173100 Sobic006G186400 Sobic006G186400 Sobic001G066300--Sobic006G186400 Sobic001G026200 Sobic001G026200 Sobic001G066300--Sobic001G026200 Sobic007G090430 Sobic007G090430 Sobic001G066300--Sobic007G090430 Sobic007G056500 Sobic007G056500 Sobic001G066300--Sobic007G056500 Sobic001G398800 Sobic001G398800 Sobic001G066300--Sobic001G398800 Sobic002G071500 Sobic002G071500 Sobic001G066300--Sobic002G071500 Sobic002G264200 Sobic002G264200 Sobic001G066300--Sobic002G264200 Sobic002G063900 Sobic002G063900 Sobic001G066300--Sobic002G063900 Sobic002G260400 Sobic002G260400 Sobic008G173100--Sobic002G260400 Sobic008G173100--Sobic007G090430 Sobic006G116100 Sobic006G116100 Sobic008G173100--Sobic006G116100 Sobic008G173100--Sobic002G063900 Sobic008G173100--Sobic002G264200 Sobic010G236400 Sobic010G236400 Sobic008G173100--Sobic010G236400 Sobic008G153000 Sobic008G153000 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic010G245000 Sobic010G245000 Sobic008G173100--Sobic010G245000 Sobic006G186400--Sobic008G153000 Sobic001G176200 Sobic001G176200 Sobic006G186400--Sobic001G176200 Sobic004G067700 Sobic004G067700 Sobic006G186400--Sobic004G067700 Sobic006G186400--Sobic008G173100 Sobic006G186400--Sobic007G056500 Sobic006G186400--Sobic002G260400 Sobic006G046700 Sobic006G046700 Sobic006G186400--Sobic006G046700 Sobic003G073000 Sobic003G073000 Sobic006G186400--Sobic003G073000 Sobic001G408700 Sobic001G408700 Sobic006G186400--Sobic001G408700 Sobic001G026200--Sobic002G071500 Sobic010G116600 Sobic010G116600 Sobic001G026200--Sobic010G116600 Sobic002G153700 Sobic002G153700 Sobic001G026200--Sobic002G153700 Sobic001G026200--Sobic010G236400 Sobic003G360400 Sobic003G360400 Sobic001G026200--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic001G026200--Sobic009G119000 Sobic001G026200--Sobic001G398800 Sobic003G119000 Sobic003G119000 Sobic001G026200--Sobic003G119000 Sobic009G044800 Sobic009G044800 Sobic001G026200--Sobic009G044800 Sobic007G090430--Sobic008G173100 Sobic009G177500 Sobic009G177500 Sobic007G090430--Sobic009G177500 Sobic001G384300 Sobic001G384300 Sobic007G090430--Sobic001G384300 Sobic009G260500 Sobic009G260500 Sobic007G090430--Sobic009G260500 Sobic007G090430--Sobic002G063900 Sobic007G090430--Sobic001G398800 Sobic004G048800 Sobic004G048800 Sobic007G090430--Sobic004G048800 Sobic005G207500 Sobic005G207500 Sobic007G090430--Sobic005G207500 Sobic002G317200 Sobic002G317200 Sobic007G090430--Sobic002G317200 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic001G042200 Sobic001G042200 Sobic007G056500--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic004G180900 Sobic004G180900 Sobic007G056500--Sobic004G180900 Sobic001G395100 Sobic001G395100 Sobic007G056500--Sobic001G395100 Sobic007G056500--Sobic001G066300 Sobic006G121300 Sobic006G121300 Sobic007G056500--Sobic006G121300 Sobic001G398800--Sobic004G048800 Sobic001G398800--Sobic001G026200 Sobic001G398800--Sobic003G360400 Sobic001G134300 Sobic001G134300 Sobic001G398800--Sobic001G134300 Sobic001G398800--Sobic002G071500 Sobic010G001100 Sobic010G001100 Sobic001G398800--Sobic010G001100 Sobic001G398800--Sobic007G090430 Sobic010G065300 Sobic010G065300 Sobic001G398800--Sobic010G065300 Sobic004G039200 Sobic004G039200 Sobic001G398800--Sobic004G039200 Sobic005G112300 Sobic005G112300 Sobic002G071500--Sobic005G112300 Sobic003G408600 Sobic003G408600 Sobic002G071500--Sobic003G408600 Sobic008G009700 Sobic008G009700 Sobic002G071500--Sobic008G009700 Sobic002G071500--Sobic010G116600 Sobic002G071500--Sobic001G026200 Sobic002G071500--Sobic002G153700 Sobic010G069100 Sobic010G069100 Sobic002G071500--Sobic010G069100 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic002G264200--Sobic010G069100 Sobic003G416700 Sobic003G416700 Sobic002G264200--Sobic003G416700 Sobic001G461400 Sobic001G461400 Sobic002G264200--Sobic001G461400 Sobic002G264200--Sobic008G153000 Sobic002G264200--Sobic010G236400 Sobic002G264200--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic002G264200--Sobic007G065400 Sobic002G264200--Sobic002G153700 Sobic006G118700 Sobic006G118700 Sobic002G264200--Sobic006G118700 Sobic002G063900--Sobic008G173100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G063900--Sobic002G260400 Sobic002G063900--Sobic007G090430 Sobic004G246100 Sobic004G246100 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic008G149800 Sobic008G149800 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.