Gene annotation
Transcriptome id Sobic.001G010300.1
Synonym Sb01g001010
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6QGQ9
Pfam -
Panther DB PTHR22850 PTHR22850:SF115
NCBI CDD KOG0265; U5 snRNP-specific protein-like factor and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50970 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os03g63470.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a012872 , Zm00025a003354 , Zm00025a017464 , Zm00025a009056 , Zm00025a016323 , Zm00025a008227
Brachypodium KQK12079 , KQK12078 , KQK12080
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G010300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
2 Sobic.010G245000 DTW domain containing protein, putative, expressed -
3 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
4 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
5 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
6 Sobic.004G158200 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.005G154500 OsFBX407 - F-box domain containing protein, expressed -
8 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
9 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
10 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
11 Sobic.003G289400 farnesyltransferase subunit beta, putative, expressed K05954: protein farnesyltransferase subunit beta
12 Sobic.008G131000 domain of unknown function family protein, expressed -
13 Sobic.004G345700 TBC domain containing protein, expressed -
14 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
15 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
16 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
17 Sobic.006G204800 APO, putative, expressed -
18 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
19 Sobic.010G204400 phox domain-containing protein, putative, expressed -
20 Sobic.005G133500 expressed protein -


Gene co-expression network
sample Sobic001G010300 Sobic001G010300 Sobic010G236400 Sobic010G236400 Sobic001G010300--Sobic010G236400 Sobic010G245000 Sobic010G245000 Sobic001G010300--Sobic010G245000 Sobic004G084300 Sobic004G084300 Sobic001G010300--Sobic004G084300 Sobic006G195700 Sobic006G195700 Sobic001G010300--Sobic006G195700 Sobic007G075900 Sobic007G075900 Sobic001G010300--Sobic007G075900 Sobic004G158200 Sobic004G158200 Sobic001G010300--Sobic004G158200 Sobic005G154500 Sobic005G154500 Sobic001G010300--Sobic005G154500 Sobic008G173100 Sobic008G173100 Sobic001G010300--Sobic008G173100 Sobic003G401100 Sobic003G401100 Sobic001G010300--Sobic003G401100 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic010G236400--Sobic003G401100 Sobic002G056701 Sobic002G056701 Sobic010G245000--Sobic002G056701 Sobic001G176200 Sobic001G176200 Sobic010G245000--Sobic001G176200 Sobic004G345700 Sobic004G345700 Sobic010G245000--Sobic004G345700 Sobic010G245000--Sobic004G084300 Sobic010G245000--Sobic005G154500 Sobic010G245000--Sobic002G264200 Sobic010G245000--Sobic008G173100 Sobic003G241200 Sobic003G241200 Sobic010G245000--Sobic003G241200 Sobic002G260400 Sobic002G260400 Sobic010G245000--Sobic002G260400 Sobic008G047800 Sobic008G047800 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic010G204400 Sobic010G204400 Sobic006G195700--Sobic010G204400 Sobic009G245800 Sobic009G245800 Sobic006G195700--Sobic009G245800 Sobic006G195700--Sobic010G236400 Sobic006G195700--Sobic002G056701 Sobic002G310200 Sobic002G310200 Sobic006G195700--Sobic002G310200 Sobic006G195700--Sobic002G260400 Sobic006G195700--Sobic010G245000 Sobic006G173100 Sobic006G173100 Sobic006G195700--Sobic006G173100 Sobic003G187500 Sobic003G187500 Sobic006G195700--Sobic003G187500 Sobic004G353200 Sobic004G353200 Sobic007G075900--Sobic004G353200 Sobic001G392300 Sobic001G392300 Sobic007G075900--Sobic001G392300 Sobic009G177500 Sobic009G177500 Sobic007G075900--Sobic009G177500 Sobic009G044800 Sobic009G044800 Sobic007G075900--Sobic009G044800 Sobic008G014500 Sobic008G014500 Sobic007G075900--Sobic008G014500 Sobic007G075900--Sobic004G274200 Sobic007G075900--Sobic003G401100 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic004G158200--Sobic004G084300 Sobic001G533700 Sobic001G533700 Sobic004G158200--Sobic001G533700 Sobic001G311500 Sobic001G311500 Sobic004G158200--Sobic001G311500 Sobic004G158200--Sobic009G065100 Sobic003G394300 Sobic003G394300 Sobic004G158200--Sobic003G394300 Sobic007G065400 Sobic007G065400 Sobic004G158200--Sobic007G065400 Sobic005G021500 Sobic005G021500 Sobic004G158200--Sobic005G021500 Sobic004G158200--Sobic008G067600 Sobic004G158200--Sobic002G006900 Sobic005G154500--Sobic001G176200 Sobic005G154500--Sobic004G345700 Sobic005G154500--Sobic003G241200 Sobic005G154500--Sobic010G245000 Sobic008G149800 Sobic008G149800 Sobic005G154500--Sobic008G149800 Sobic005G154500--Sobic008G173100 Sobic005G015900 Sobic005G015900 Sobic005G154500--Sobic005G015900 Sobic002G357700 Sobic002G357700 Sobic005G154500--Sobic002G357700 Sobic006G116100 Sobic006G116100 Sobic005G154500--Sobic006G116100 Sobic008G173100--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic008G173100--Sobic007G090430 Sobic008G173100--Sobic006G116100 Sobic002G063900 Sobic002G063900 Sobic008G173100--Sobic002G063900 Sobic008G173100--Sobic002G264200 Sobic008G173100--Sobic010G236400 Sobic008G153000 Sobic008G153000 Sobic008G173100--Sobic008G153000 Sobic008G173100--Sobic001G311500 Sobic008G173100--Sobic010G245000 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic003G401100--Sobic004G274200 Sobic003G401100--Sobic003G241200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.