Gene annotation
Transcriptome id Sobic.004G158200.1
Synonym Sb04g021110
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XT84
Pfam PF00097
Panther DB PTHR12983
NCBI CDD KOG2164; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26730 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g31150.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020449
Brachypodium KQJ99626
Barley HORVU5Hr1G043380.1 , HORVU5Hr1G043380.2 , HORVU5Hr1G043380.5 , HORVU5Hr1G043380.4 , HORVU5Hr1G043380.6 , HORVU5Hr1G043380.3
Wheat TraesCS5D02G139400 , TraesCS5D02G139400 , TraesCS5D02G139400 , TraesCS5A02G135100 , TraesCS5B02G133900 , TraesCS5B02G133900 , TraesCS5B02G133900 , TraesCS5A02G135100
Populus -


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cDNA sequences
Sobic.004G158200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
2 Sobic.001G533700 STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
3 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
4 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
5 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
7 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
8 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
9 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.002G320500 MYB family transcription factor, putative, expressed -
11 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
12 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
13 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
14 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
15 Sobic.009G210500 expressed protein -
16 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
17 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
18 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
19 Sobic.004G258700 PHD-finger family protein, expressed -
20 Sobic.003G372700 expressed protein -


Gene co-expression network
sample Sobic004G158200 Sobic004G158200 Sobic004G084300 Sobic004G084300 Sobic004G158200--Sobic004G084300 Sobic001G533700 Sobic001G533700 Sobic004G158200--Sobic001G533700 Sobic001G311500 Sobic001G311500 Sobic004G158200--Sobic001G311500 Sobic009G065100 Sobic009G065100 Sobic004G158200--Sobic009G065100 Sobic003G394300 Sobic003G394300 Sobic004G158200--Sobic003G394300 Sobic007G065400 Sobic007G065400 Sobic004G158200--Sobic007G065400 Sobic005G021500 Sobic005G021500 Sobic004G158200--Sobic005G021500 Sobic008G067600 Sobic008G067600 Sobic004G158200--Sobic008G067600 Sobic002G006900 Sobic002G006900 Sobic004G158200--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic004G084300--Sobic008G067600 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic001G533700--Sobic004G158200 Sobic001G533700--Sobic005G021500 Sobic001G205200 Sobic001G205200 Sobic001G533700--Sobic001G205200 Sobic007G167500 Sobic007G167500 Sobic001G533700--Sobic007G167500 Sobic001G533700--Sobic002G006900 Sobic008G173900 Sobic008G173900 Sobic001G533700--Sobic008G173900 Sobic006G048500 Sobic006G048500 Sobic001G533700--Sobic006G048500 Sobic001G533700--Sobic009G065100 Sobic009G210500 Sobic009G210500 Sobic001G533700--Sobic009G210500 Sobic010G139000 Sobic010G139000 Sobic001G311500--Sobic010G139000 Sobic009G247400 Sobic009G247400 Sobic001G311500--Sobic009G247400 Sobic005G112300 Sobic005G112300 Sobic001G311500--Sobic005G112300 Sobic003G059750 Sobic003G059750 Sobic001G311500--Sobic003G059750 Sobic008G009700 Sobic008G009700 Sobic001G311500--Sobic008G009700 Sobic004G314000 Sobic004G314000 Sobic001G311500--Sobic004G314000 Sobic010G279450 Sobic010G279450 Sobic001G311500--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G311500--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic001G311500--Sobic001G363500 Sobic002G320500 Sobic002G320500 Sobic009G065100--Sobic002G320500 Sobic002G157000 Sobic002G157000 Sobic009G065100--Sobic002G157000 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic009G065100--Sobic004G084300 Sobic002G144933 Sobic002G144933 Sobic009G065100--Sobic002G144933 Sobic002G309800 Sobic002G309800 Sobic009G065100--Sobic002G309800 Sobic001G107500 Sobic001G107500 Sobic009G065100--Sobic001G107500 Sobic003G197800 Sobic003G197800 Sobic009G065100--Sobic003G197800 Sobic003G445400 Sobic003G445400 Sobic003G394300--Sobic003G445400 Sobic003G394300--Sobic004G084300 Sobic003G307000 Sobic003G307000 Sobic003G394300--Sobic003G307000 Sobic004G088200 Sobic004G088200 Sobic003G394300--Sobic004G088200 Sobic003G394300--Sobic005G021500 Sobic003G394300--Sobic008G067600 Sobic003G394300--Sobic004G158200 Sobic009G000500 Sobic009G000500 Sobic003G394300--Sobic009G000500 Sobic007G078600 Sobic007G078600 Sobic003G394300--Sobic007G078600 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic007G065400--Sobic008G028700 Sobic005G021500--Sobic002G320500 Sobic005G021500--Sobic009G065100 Sobic005G021500--Sobic003G394300 Sobic005G021500--Sobic001G533700 Sobic005G021500--Sobic004G158200 Sobic004G039200 Sobic004G039200 Sobic005G021500--Sobic004G039200 Sobic005G021500--Sobic009G000500 Sobic006G133800 Sobic006G133800 Sobic005G021500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic005G021500--Sobic001G090400 Sobic008G067600--Sobic001G090400 Sobic008G067600--Sobic003G445400 Sobic008G067600--Sobic004G084300 Sobic002G157300 Sobic002G157300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic001G512700 Sobic001G512700 Sobic008G067600--Sobic001G512700 Sobic008G067600--Sobic009G000500 Sobic004G057400 Sobic004G057400 Sobic008G067600--Sobic004G057400 Sobic008G067600--Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G309600 Sobic002G309600 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700
Octagon: transcription factors


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