Gene annotation
Transcriptome id Sobic.005G138300.1
Synonym RB, Sb05g020280, RBR1, RBR, RB1, ATRBR1
Functional annotation retinoblastoma-related protein-like, putative, expressed
UniProt A0A1Z5RIH8
Pfam PF11934 PF01857 PF01858
Panther DB PTHR13742 PTHR13742:SF22
NCBI CDD KOG1010; Rb (Retinoblastoma tumor suppressor)-related protein
KEGG Orthology K04681; retinoblastoma-like protein 1
Gene Ontology GO:0005634; nucleus GO:0006357regulation of transcription by RNA polymerase II


Orthologs (automatic annotation)
TAIR AT3G12280 : retinoblastoma-related 1
RAP-DB (Rice) LOC_Os11g32900.1 : retinoblastoma-related protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a015698 , Zm00025a033575
Brachypodium KQJ88348
Barley -
Wheat TraesCS4A02G143200 , TraesCS4A02G143200 , TraesCS4A02G143200 , TraesCS4A02G143200 , TraesCS4A02G143200 , TraesCS4B02G162200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G444800 expressed protein -
2 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
3 Sobic.001G114000 expressed protein -
4 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
5 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
6 Sobic.K028600 expressed protein -
7 Sobic.002G112700 glutamine-dependent NAD, putative, expressed K01950: E6.3.5.1, NADSYN1, QNS1, NAD+ synthase (glutamine-hydrolysing)
8 Sobic.004G265500 SET domain protein SDG117, putative, expressed -
9 Sobic.002G164300 ZOS9-03 - C2H2 zinc finger protein, expressed -
10 Sobic.009G041700 Fibronectin type III domain containing protein, expressed -
11 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
12 Sobic.003G143200 expressed protein -
13 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
14 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
15 Sobic.007G017800 OsFBX142 - F-box domain containing protein, expressed -
16 Sobic.007G132100 myrosinase precursor, putative, expressed -
17 Sobic.001G363500 DIRP family protein, putative, expressed -
18 Sobic.007G125000 OsAPRL4 adenosine 5\'-phosphosulfate reductase-like OsAPRL4, expressed -
19 Sobic.004G357100 expressed protein -
20 Sobic.001G405600 basic helix-loop-helix, putative, expressed K10863: aprataxin


Gene co-expression network
sample Sobic005G138300 Sobic005G138300 Sobic003G444800 Sobic003G444800 Sobic005G138300--Sobic003G444800 Sobic007G218000 Sobic007G218000 Sobic005G138300--Sobic007G218000 Sobic001G114000 Sobic001G114000 Sobic005G138300--Sobic001G114000 Sobic009G124700 Sobic009G124700 Sobic005G138300--Sobic009G124700 Sobic002G103600 Sobic002G103600 Sobic005G138300--Sobic002G103600 SobicK028600 SobicK028600 Sobic005G138300--SobicK028600 Sobic002G112700 Sobic002G112700 Sobic005G138300--Sobic002G112700 Sobic004G265500 Sobic004G265500 Sobic005G138300--Sobic004G265500 Sobic002G164300 Sobic002G164300 Sobic005G138300--Sobic002G164300 Sobic003G444800--SobicK028600 Sobic003G059750 Sobic003G059750 Sobic003G444800--Sobic003G059750 Sobic003G444800--Sobic002G103600 Sobic004G357100 Sobic004G357100 Sobic003G444800--Sobic004G357100 Sobic007G042400 Sobic007G042400 Sobic003G444800--Sobic007G042400 Sobic003G444800--Sobic002G112700 Sobic010G279450 Sobic010G279450 Sobic003G444800--Sobic010G279450 Sobic006G234700 Sobic006G234700 Sobic003G444800--Sobic006G234700 Sobic001G376200 Sobic001G376200 Sobic003G444800--Sobic001G376200 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic007G217000 Sobic007G217000 Sobic001G114000--Sobic007G217000 Sobic001G114000--Sobic002G112700 Sobic001G065000 Sobic001G065000 Sobic001G114000--Sobic001G065000 Sobic004G067700 Sobic004G067700 Sobic001G114000--Sobic004G067700 Sobic009G166300 Sobic009G166300 Sobic001G114000--Sobic009G166300 Sobic008G047800 Sobic008G047800 Sobic001G114000--Sobic008G047800 Sobic001G114000--Sobic004G072100 Sobic005G118600 Sobic005G118600 Sobic001G114000--Sobic005G118600 Sobic009G126400 Sobic009G126400 Sobic001G114000--Sobic009G126400 Sobic009G124700--Sobic007G218000 Sobic009G124700--Sobic009G044800 Sobic003G443100 Sobic003G443100 Sobic009G124700--Sobic003G443100 Sobic009G177500 Sobic009G177500 Sobic009G124700--Sobic009G177500 Sobic007G075900 Sobic007G075900 Sobic009G124700--Sobic007G075900 Sobic003G118200 Sobic003G118200 Sobic009G124700--Sobic003G118200 Sobic001G441400 Sobic001G441400 Sobic009G124700--Sobic001G441400 Sobic009G124700--Sobic007G132100 Sobic009G124700--Sobic005G138300 Sobic002G103600--Sobic003G444800 Sobic005G013200 Sobic005G013200 Sobic002G103600--Sobic005G013200 Sobic002G103600--SobicK028600 Sobic002G103600--Sobic003G059750 Sobic001G311500 Sobic001G311500 Sobic002G103600--Sobic001G311500 Sobic009G247400 Sobic009G247400 Sobic002G103600--Sobic009G247400 Sobic002G408200 Sobic002G408200 Sobic002G103600--Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic002G103600--Sobic008G028700 Sobic002G103600--Sobic007G042400 SobicK028600--Sobic003G444800 SobicK028600--Sobic004G357100 Sobic001G308400 Sobic001G308400 SobicK028600--Sobic001G308400 SobicK028600--Sobic002G103600 SobicK028600--Sobic007G042400 Sobic006G116100 Sobic006G116100 SobicK028600--Sobic006G116100 Sobic003G043000 Sobic003G043000 SobicK028600--Sobic003G043000 SobicK028600--Sobic006G234700 Sobic002G063900 Sobic002G063900 SobicK028600--Sobic002G063900 Sobic002G112700--Sobic001G114000 Sobic002G112700--Sobic007G218000 Sobic007G008900 Sobic007G008900 Sobic002G112700--Sobic007G008900 Sobic002G112700--Sobic003G059750 Sobic002G405800 Sobic002G405800 Sobic002G112700--Sobic002G405800 Sobic002G112700--Sobic003G444800 Sobic002G112700--Sobic004G072100 Sobic007G011300 Sobic007G011300 Sobic002G112700--Sobic007G011300 Sobic002G112700--Sobic009G166300 Sobic004G265500--Sobic003G043000 Sobic003G163200 Sobic003G163200 Sobic004G265500--Sobic003G163200 Sobic004G265500--Sobic001G308400 Sobic004G265500--Sobic004G357100 Sobic010G000800 Sobic010G000800 Sobic004G265500--Sobic010G000800 Sobic002G042600 Sobic002G042600 Sobic004G265500--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic004G265500--Sobic004G053500 Sobic004G265500--SobicK028600 Sobic002G227500 Sobic002G227500 Sobic004G265500--Sobic002G227500 Sobic008G149800 Sobic008G149800 Sobic002G164300--Sobic008G149800 Sobic002G357700 Sobic002G357700 Sobic002G164300--Sobic002G357700 Sobic002G164300--SobicK028600 Sobic002G164300--Sobic004G357100 Sobic002G260400 Sobic002G260400 Sobic002G164300--Sobic002G260400 Sobic007G125000 Sobic007G125000 Sobic002G164300--Sobic007G125000 Sobic004G246100 Sobic004G246100 Sobic002G164300--Sobic004G246100 Sobic009G049400 Sobic009G049400 Sobic002G164300--Sobic009G049400 Sobic009G192300 Sobic009G192300 Sobic002G164300--Sobic009G192300
Octagon: transcription factors


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