Gene annotation
Transcriptome id Sobic.001G332700.7,Sobic.001G332700.9,Sobic.001G332700.11,Sobic.001G332700.12,Sobic.001G332700.10,Sobic.001G332700.13,Sobic.001G332700.1,Sobic.001G332700.2,Sobic.001G332700.4,Sobic.001G332700.8,Sobic.001G332700.6,Sobic.001G332700.5,Sobic.001G332700.3
Synonym Sb01g032140
Functional annotation pentatricopeptide repeat protein PPR986-12, putative, expressed
UniProt C5WWH1 , A0A1Z5S8X0 , A0A1Z5S954 , A0A1Z5S8V5 , A0A1Z5S8U4
Pfam PF01535 PF01535 PF13041 PF13041
Panther DB PTHR24015 PTHR24015:SF608
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18750 : mitochondrial editing factor 22,Tetratricopeptide repeat (TPR)-like superfamily protein,Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g25530.1 : pentatricopeptide repeat protein PPR986-12, putative, expressed
MaizeGDB (Corn) Zm00025a002924 , Zm00025a002925
Brachypodium -
Barley HORVU7Hr1G091770.11 , HORVU7Hr1G091770.10 , HORVU7Hr1G091770.13 , HORVU7Hr1G091770.12 , HORVU7Hr1G091770.15 , HORVU7Hr1G091770.14 , HORVU7Hr1G091770.5 , HORVU7Hr1G091770.4 , HORVU7Hr1G091770.7 , HORVU7Hr1G091770.6 , HORVU7Hr1G091770.1 , HORVU7Hr1G091770.3 , HORVU7Hr1G091770.2 , HORVU7Hr1G091770.9 , HORVU7Hr1G091770.8
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G138300 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
2 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
3 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
4 Sobic.003G444800 expressed protein -
5 Sobic.003G243800 - -
6 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
7 Sobic.001G376200 auxin response factor, putative, expressed -
8 Sobic.002G260400 - -
9 Sobic.007G017800 OsFBX142 - F-box domain containing protein, expressed -
10 Sobic.007G042400 HEAT repeat family protein, putative, expressed -
11 Sobic.K028600 expressed protein -
12 Sobic.003G039900 OsFBDUF1 - F-box and DUF domain containing protein, expressed -
13 Sobic.009G192300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
14 Sobic.004G111700 tyrosine-protein phosphatase YVH1, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
15 Sobic.008G088872 - -
16 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
17 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
18 Sobic.001G308400 expressed protein -
19 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
20 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase


Gene co-expression network
sample Sobic001G332700 Sobic001G332700 Sobic005G138300 Sobic005G138300 Sobic001G332700--Sobic005G138300 Sobic006G234700 Sobic006G234700 Sobic001G332700--Sobic006G234700 Sobic002G103600 Sobic002G103600 Sobic001G332700--Sobic002G103600 Sobic003G444800 Sobic003G444800 Sobic001G332700--Sobic003G444800 Sobic003G243800 Sobic003G243800 Sobic001G332700--Sobic003G243800 Sobic010G059500 Sobic010G059500 Sobic001G332700--Sobic010G059500 Sobic001G376200 Sobic001G376200 Sobic001G332700--Sobic001G376200 Sobic002G260400 Sobic002G260400 Sobic001G332700--Sobic002G260400 Sobic007G017800 Sobic007G017800 Sobic001G332700--Sobic007G017800 Sobic005G138300--Sobic003G444800 Sobic007G218000 Sobic007G218000 Sobic005G138300--Sobic007G218000 Sobic001G114000 Sobic001G114000 Sobic005G138300--Sobic001G114000 Sobic009G124700 Sobic009G124700 Sobic005G138300--Sobic009G124700 Sobic005G138300--Sobic002G103600 SobicK028600 SobicK028600 Sobic005G138300--SobicK028600 Sobic002G112700 Sobic002G112700 Sobic005G138300--Sobic002G112700 Sobic004G265500 Sobic004G265500 Sobic005G138300--Sobic004G265500 Sobic002G164300 Sobic002G164300 Sobic005G138300--Sobic002G164300 Sobic004G096400 Sobic004G096400 Sobic006G234700--Sobic004G096400 Sobic006G234700--Sobic010G059500 Sobic009G192300 Sobic009G192300 Sobic006G234700--Sobic009G192300 Sobic007G042400 Sobic007G042400 Sobic006G234700--Sobic007G042400 Sobic006G234700--Sobic003G444800 Sobic001G493200 Sobic001G493200 Sobic006G234700--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic006G234700--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic006G234700--Sobic001G433800 Sobic002G083500 Sobic002G083500 Sobic006G234700--Sobic002G083500 Sobic002G103600--Sobic003G444800 Sobic005G013200 Sobic005G013200 Sobic002G103600--Sobic005G013200 Sobic002G103600--SobicK028600 Sobic003G059750 Sobic003G059750 Sobic002G103600--Sobic003G059750 Sobic001G311500 Sobic001G311500 Sobic002G103600--Sobic001G311500 Sobic009G247400 Sobic009G247400 Sobic002G103600--Sobic009G247400 Sobic002G408200 Sobic002G408200 Sobic002G103600--Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic002G103600--Sobic008G028700 Sobic002G103600--Sobic007G042400 Sobic003G444800--SobicK028600 Sobic003G444800--Sobic003G059750 Sobic003G444800--Sobic002G103600 Sobic004G357100 Sobic004G357100 Sobic003G444800--Sobic004G357100 Sobic003G444800--Sobic007G042400 Sobic003G444800--Sobic002G112700 Sobic010G279450 Sobic010G279450 Sobic003G444800--Sobic010G279450 Sobic003G444800--Sobic006G234700 Sobic003G444800--Sobic001G376200 Sobic003G243800--Sobic001G376200 Sobic003G086300 Sobic003G086300 Sobic003G243800--Sobic003G086300 Sobic009G217400 Sobic009G217400 Sobic003G243800--Sobic009G217400 Sobic003G243800--Sobic001G332700 Sobic010G218000 Sobic010G218000 Sobic003G243800--Sobic010G218000 Sobic001G141400 Sobic001G141400 Sobic003G243800--Sobic001G141400 Sobic003G039900 Sobic003G039900 Sobic003G243800--Sobic003G039900 Sobic001G253300 Sobic001G253300 Sobic003G243800--Sobic001G253300 Sobic007G182000 Sobic007G182000 Sobic003G243800--Sobic007G182000 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic010G059500--Sobic004G096400 Sobic010G059500--Sobic006G234700 Sobic001G145400 Sobic001G145400 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic006G077200 Sobic006G077200 Sobic010G059500--Sobic006G077200 Sobic010G059500--Sobic001G493200 Sobic001G376200--Sobic003G444800 Sobic002G016200 Sobic002G016200 Sobic001G376200--Sobic002G016200 Sobic001G376200--SobicK028600 Sobic007G147400 Sobic007G147400 Sobic001G376200--Sobic007G147400 Sobic001G376200--Sobic009G192300 Sobic001G308400 Sobic001G308400 Sobic001G376200--Sobic001G308400 Sobic010G169900 Sobic010G169900 Sobic001G376200--Sobic010G169900 Sobic010G226000 Sobic010G226000 Sobic001G376200--Sobic010G226000 Sobic001G376200--Sobic002G103600 Sobic008G173100 Sobic008G173100 Sobic002G260400--Sobic008G173100 Sobic002G056701 Sobic002G056701 Sobic002G260400--Sobic002G056701 Sobic002G063900 Sobic002G063900 Sobic002G260400--Sobic002G063900 Sobic002G370900 Sobic002G370900 Sobic002G260400--Sobic002G370900 Sobic006G116100 Sobic006G116100 Sobic002G260400--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic002G260400--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G260400--Sobic010G236400 Sobic002G260400--Sobic002G083500 Sobic010G245000 Sobic010G245000 Sobic002G260400--Sobic010G245000 Sobic001G405600 Sobic001G405600 Sobic007G017800--Sobic001G405600 Sobic007G017800--Sobic002G103600 Sobic003G143200 Sobic003G143200 Sobic007G017800--Sobic003G143200 Sobic004G185800 Sobic004G185800 Sobic007G017800--Sobic004G185800 Sobic007G017800--Sobic010G034100 Sobic008G162900 Sobic008G162900 Sobic007G017800--Sobic008G162900 Sobic009G177500 Sobic009G177500 Sobic007G017800--Sobic009G177500 Sobic007G017800--Sobic006G234700 Sobic008G063300 Sobic008G063300 Sobic007G017800--Sobic008G063300
Octagon: transcription factors


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