Gene annotation
Transcriptome id Sobic.009G192300.1,Sobic.009G192300.2
Synonym Sb09g025110, UBP25
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt A0A1B6P9A4
Pfam PF13423
Panther DB PTHR24006
NCBI CDD KOG1871; Ubiquitin-specific protease
KEGG Orthology K11855; ubiquitin carboxyl-terminal hydrolase 36/42
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14400 : ubiquitin-specific protease 25
RAP-DB (Rice) LOC_Os05g43480.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009697 , Zm00025a009695 , Zm00025a037901 , Zm00025a044186
Brachypodium KQK05481 , KQK05482
Barley HORVU1Hr1G077630.2 , HORVU1Hr1G077630.3 , HORVU1Hr1G077630.1 , HORVU1Hr1G077630.4 , HORVU1Hr1G077630.5
Wheat TraesCS1D02G331300 , TraesCS1D02G331300 , TraesCS1A02G329200 , TraesCS1A02G329200 , TraesCS1B02G342600 , TraesCS1B02G342600
Populus -


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cDNA sequences
Sobic.009G192300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
2 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
3 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
4 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
5 Sobic.009G084900 expressed protein -
6 Sobic.003G444800 expressed protein -
7 Sobic.002G260400 - -
8 Sobic.K028600 expressed protein -
9 Sobic.007G125000 OsAPRL4 adenosine 5\'-phosphosulfate reductase-like OsAPRL4, expressed -
10 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
11 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
12 Sobic.006G252900 ubiquitin family protein, putative, expressed -
13 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
14 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
15 Sobic.002G164300 ZOS9-03 - C2H2 zinc finger protein, expressed -
16 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
17 Sobic.001G376200 auxin response factor, putative, expressed -
18 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
19 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
20 Sobic.001G405600 basic helix-loop-helix, putative, expressed K10863: aprataxin


Gene co-expression network
sample Sobic009G192300 Sobic009G192300 Sobic004G096400 Sobic004G096400 Sobic009G192300--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic009G192300--Sobic006G234700 Sobic010G059500 Sobic010G059500 Sobic009G192300--Sobic010G059500 Sobic010G034100 Sobic010G034100 Sobic009G192300--Sobic010G034100 Sobic009G084900 Sobic009G084900 Sobic009G192300--Sobic009G084900 Sobic003G444800 Sobic003G444800 Sobic009G192300--Sobic003G444800 Sobic002G260400 Sobic002G260400 Sobic009G192300--Sobic002G260400 SobicK028600 SobicK028600 Sobic009G192300--SobicK028600 Sobic007G125000 Sobic007G125000 Sobic009G192300--Sobic007G125000 Sobic004G096400--Sobic006G234700 Sobic004G096400--Sobic009G192300 Sobic004G096400--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic004G096400--Sobic001G493200 Sobic004G096400--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic004G096400--Sobic001G433800 Sobic003G249600 Sobic003G249600 Sobic004G096400--Sobic003G249600 Sobic006G077200 Sobic006G077200 Sobic004G096400--Sobic006G077200 Sobic007G132100 Sobic007G132100 Sobic004G096400--Sobic007G132100 Sobic006G234700--Sobic004G096400 Sobic006G234700--Sobic010G059500 Sobic006G234700--Sobic009G192300 Sobic007G042400 Sobic007G042400 Sobic006G234700--Sobic007G042400 Sobic006G234700--Sobic003G444800 Sobic006G234700--Sobic001G493200 Sobic006G234700--Sobic009G084900 Sobic006G234700--Sobic001G433800 Sobic002G083500 Sobic002G083500 Sobic006G234700--Sobic002G083500 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic010G059500--Sobic004G096400 Sobic010G059500--Sobic006G234700 Sobic001G145400 Sobic001G145400 Sobic010G059500--Sobic001G145400 Sobic010G059500--Sobic010G034100 Sobic010G059500--Sobic006G077200 Sobic010G059500--Sobic001G493200 Sobic010G034100--Sobic010G059500 Sobic010G034100--Sobic001G035200 Sobic010G034100--Sobic009G192300 Sobic001G405600 Sobic001G405600 Sobic010G034100--Sobic001G405600 Sobic010G034100--Sobic009G084900 Sobic001G283600 Sobic001G283600 Sobic010G034100--Sobic001G283600 Sobic001G020000 Sobic001G020000 Sobic010G034100--Sobic001G020000 Sobic006G252900 Sobic006G252900 Sobic010G034100--Sobic006G252900 Sobic002G227500 Sobic002G227500 Sobic010G034100--Sobic002G227500 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic009G084900--Sobic001G433800 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic003G444800--SobicK028600 Sobic003G059750 Sobic003G059750 Sobic003G444800--Sobic003G059750 Sobic002G103600 Sobic002G103600 Sobic003G444800--Sobic002G103600 Sobic004G357100 Sobic004G357100 Sobic003G444800--Sobic004G357100 Sobic003G444800--Sobic007G042400 Sobic002G112700 Sobic002G112700 Sobic003G444800--Sobic002G112700 Sobic010G279450 Sobic010G279450 Sobic003G444800--Sobic010G279450 Sobic003G444800--Sobic006G234700 Sobic001G376200 Sobic001G376200 Sobic003G444800--Sobic001G376200 Sobic008G173100 Sobic008G173100 Sobic002G260400--Sobic008G173100 Sobic002G056701 Sobic002G056701 Sobic002G260400--Sobic002G056701 Sobic002G063900 Sobic002G063900 Sobic002G260400--Sobic002G063900 Sobic002G370900 Sobic002G370900 Sobic002G260400--Sobic002G370900 Sobic006G116100 Sobic006G116100 Sobic002G260400--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic002G260400--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G260400--Sobic010G236400 Sobic002G260400--Sobic002G083500 Sobic010G245000 Sobic010G245000 Sobic002G260400--Sobic010G245000 SobicK028600--Sobic003G444800 SobicK028600--Sobic004G357100 Sobic001G308400 Sobic001G308400 SobicK028600--Sobic001G308400 SobicK028600--Sobic002G103600 SobicK028600--Sobic007G042400 SobicK028600--Sobic006G116100 Sobic003G043000 Sobic003G043000 SobicK028600--Sobic003G043000 SobicK028600--Sobic006G234700 SobicK028600--Sobic002G063900 Sobic007G218000 Sobic007G218000 Sobic007G125000--Sobic007G218000 Sobic007G125000--Sobic002G112700 Sobic009G092400 Sobic009G092400 Sobic007G125000--Sobic009G092400 Sobic007G125000--Sobic007G132100 Sobic007G125000--Sobic009G192300 Sobic002G164300 Sobic002G164300 Sobic007G125000--Sobic002G164300 Sobic007G008900 Sobic007G008900 Sobic007G125000--Sobic007G008900 Sobic009G126600 Sobic009G126600 Sobic007G125000--Sobic009G126600 Sobic004G072100 Sobic004G072100 Sobic007G125000--Sobic004G072100
Octagon: transcription factors


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