Gene annotation
Transcriptome id Sobic.010G140400.3,Sobic.010G140400.1,Sobic.010G140400.2
Synonym PHS1, Sb10g015270
Functional annotation poor homologous synapsis 1 protein, putative, expressed
UniProt A0A194YJ34 , A0A194YK71 , A0A194YJ56
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10710 : poor homologous synapsis 1
RAP-DB (Rice) LOC_Os06g27860.1 : poor homologous synapsis 1 protein, putative, expressed
MaizeGDB (Corn) Zm00025a050746
Brachypodium -
Barley HORVU7Hr1G048020.8 , HORVU7Hr1G048020.3 , HORVU7Hr1G048020.2 , HORVU7Hr1G048020.1 , HORVU7Hr1G048020.7 , HORVU7Hr1G048020.6 , HORVU7Hr1G048020.5 , HORVU7Hr1G048020.4 , HORVU7Hr1G048020.13 , HORVU7Hr1G048020.11 , HORVU7Hr1G048020.14
Wheat TraesCS7B02G132000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G140400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
2 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
3 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
4 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
5 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
6 Sobic.003G443100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
7 Sobic.008G162900 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
8 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
9 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
10 Sobic.005G064000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
11 Sobic.009G050900 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
12 Sobic.001G002000 protein kinase domain containing protein, expressed -
13 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
14 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
15 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
16 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
17 Sobic.010G126000 WD-40 repeat family protein, putative, expressed -
18 Sobic.009G084900 expressed protein -
19 Sobic.009G192300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
20 Sobic.004G185800 expressed protein -


Gene co-expression network
sample Sobic010G140400 Sobic010G140400 Sobic010G145800 Sobic010G145800 Sobic010G140400--Sobic010G145800 Sobic001G493200 Sobic001G493200 Sobic010G140400--Sobic001G493200 Sobic001G219600 Sobic001G219600 Sobic010G140400--Sobic001G219600 Sobic006G234700 Sobic006G234700 Sobic010G140400--Sobic006G234700 Sobic007G203200 Sobic007G203200 Sobic010G140400--Sobic007G203200 Sobic003G443100 Sobic003G443100 Sobic010G140400--Sobic003G443100 Sobic008G162900 Sobic008G162900 Sobic010G140400--Sobic008G162900 Sobic010G279450 Sobic010G279450 Sobic010G140400--Sobic010G279450 Sobic001G227200 Sobic001G227200 Sobic010G140400--Sobic001G227200 Sobic010G145800--Sobic007G203200 Sobic010G145800--Sobic010G140400 Sobic001G002600 Sobic001G002600 Sobic010G145800--Sobic001G002600 Sobic010G145800--Sobic001G227200 Sobic009G260500 Sobic009G260500 Sobic010G145800--Sobic009G260500 Sobic007G011600 Sobic007G011600 Sobic010G145800--Sobic007G011600 Sobic001G083400 Sobic001G083400 Sobic010G145800--Sobic001G083400 Sobic010G237900 Sobic010G237900 Sobic010G145800--Sobic010G237900 Sobic010G145800--Sobic001G219600 Sobic009G084900 Sobic009G084900 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic010G139000 Sobic010G139000 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic006G234700--Sobic004G096400 Sobic006G234700--Sobic010G059500 Sobic009G192300 Sobic009G192300 Sobic006G234700--Sobic009G192300 Sobic007G042400 Sobic007G042400 Sobic006G234700--Sobic007G042400 Sobic003G444800 Sobic003G444800 Sobic006G234700--Sobic003G444800 Sobic006G234700--Sobic001G493200 Sobic006G234700--Sobic009G084900 Sobic006G234700--Sobic001G433800 Sobic002G083500 Sobic002G083500 Sobic006G234700--Sobic002G083500 Sobic007G203200--Sobic010G145800 Sobic009G050900 Sobic009G050900 Sobic007G203200--Sobic009G050900 Sobic001G407200 Sobic001G407200 Sobic007G203200--Sobic001G407200 Sobic001G281600 Sobic001G281600 Sobic007G203200--Sobic001G281600 Sobic007G203200--Sobic010G140400 Sobic010G279700 Sobic010G279700 Sobic007G203200--Sobic010G279700 Sobic005G106500 Sobic005G106500 Sobic007G203200--Sobic005G106500 Sobic003G401100 Sobic003G401100 Sobic007G203200--Sobic003G401100 Sobic006G118700 Sobic006G118700 Sobic007G203200--Sobic006G118700 Sobic002G310200 Sobic002G310200 Sobic003G443100--Sobic002G310200 Sobic003G184699 Sobic003G184699 Sobic003G443100--Sobic003G184699 Sobic008G047800 Sobic008G047800 Sobic003G443100--Sobic008G047800 Sobic001G441400 Sobic001G441400 Sobic003G443100--Sobic001G441400 Sobic009G245800 Sobic009G245800 Sobic003G443100--Sobic009G245800 Sobic005G027400 Sobic005G027400 Sobic003G443100--Sobic005G027400 Sobic003G443100--Sobic003G141500 Sobic001G363500 Sobic001G363500 Sobic003G443100--Sobic001G363500 Sobic010G053800 Sobic010G053800 Sobic003G443100--Sobic010G053800 Sobic008G162900--Sobic003G184699 Sobic009G126400 Sobic009G126400 Sobic008G162900--Sobic009G126400 Sobic008G162900--Sobic008G047800 Sobic008G162900--Sobic001G407200 Sobic005G013200 Sobic005G013200 Sobic008G162900--Sobic005G013200 Sobic003G052200 Sobic003G052200 Sobic008G162900--Sobic003G052200 Sobic006G216800 Sobic006G216800 Sobic008G162900--Sobic006G216800 Sobic001G222500 Sobic001G222500 Sobic008G162900--Sobic001G222500 Sobic002G343901 Sobic002G343901 Sobic008G162900--Sobic002G343901 Sobic005G112300 Sobic005G112300 Sobic010G279450--Sobic005G112300 Sobic010G279450--Sobic010G139000 Sobic002G405800 Sobic002G405800 Sobic010G279450--Sobic002G405800 Sobic004G314000 Sobic004G314000 Sobic010G279450--Sobic004G314000 Sobic003G059750 Sobic003G059750 Sobic010G279450--Sobic003G059750 Sobic008G028700 Sobic008G028700 Sobic010G279450--Sobic008G028700 Sobic010G279450--Sobic001G363500 Sobic004G009600 Sobic004G009600 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic004G140600 Sobic004G140600 Sobic001G227200--Sobic004G140600 Sobic009G177500 Sobic009G177500 Sobic001G227200--Sobic009G177500 Sobic001G227200--Sobic005G106500 Sobic001G227200--Sobic010G139000 Sobic001G227200--Sobic002G343901 Sobic004G258700 Sobic004G258700 Sobic001G227200--Sobic004G258700 Sobic001G311500 Sobic001G311500 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G456900 Sobic001G456900 Sobic001G227200--Sobic001G456900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.