Gene annotation
Transcriptome id Sobic.001G373400.1,Sobic.001G373400.2
Synonym Sb01g035470
Functional annotation peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed
UniProt A0A1B6QN95
Pfam PF01195
Panther DB PTHR17224 PTHR17224:SF4
NCBI CDD KOG2255; Peptidyl-tRNA hydrolase
KEGG Orthology K01056; PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
Gene Ontology GO:0004045; aminoacyl-tRNA hydrolase activity


Orthologs (automatic annotation)
TAIR AT5G19830 : Peptidyl-tRNA hydrolase family protein
RAP-DB (Rice) LOC_Os03g22610.2 : peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a002440
Brachypodium -
Barley HORVU2Hr1G120990.7 , HORVU2Hr1G120990.6 , HORVU2Hr1G120990.5 , HORVU2Hr1G120990.4 , HORVU2Hr1G120990.2 , HORVU2Hr1G120990.1 , HORVU2Hr1G120990.9 , HORVU2Hr1G120990.8 , HORVU2Hr1G121110.5 , HORVU2Hr1G121110.6 , HORVU2Hr1G121110.7 , HORVU2Hr1G121110.1 , HORVU2Hr1G121110.2 , HORVU2Hr1G121110.3 , HORVU2Hr1G121110.8 , HORVU2Hr1G121110.9 , HORVU2Hr1G121110.23 , HORVU2Hr1G121110.22 , HORVU2Hr1G121110.20 , HORVU2Hr1G121110.16 , HORVU2Hr1G121110.17 , HORVU2Hr1G121110.14 , HORVU2Hr1G121110.15 , HORVU2Hr1G121110.13 , HORVU2Hr1G121110.10 , HORVU2Hr1G121110.11 , HORVU2Hr1G121110.18 , HORVU2Hr1G121110.19
Wheat TraesCS2D02G548800 , TraesCS2D02G548800
Populus -


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cDNA sequences
Sobic.001G373400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
2 Sobic.003G413100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
3 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
4 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
5 Sobic.002G063900 zinc ion binding protein, putative, expressed -
6 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
7 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
8 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
9 Sobic.009G126600 cyclin-dependent kinase D-1, putative, expressed K02202: cyclin-dependent kinase 7
10 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
11 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
12 Sobic.005G191700 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
13 Sobic.008G147200 tubulin, putative, expressed -
14 Sobic.007G147400 - -
15 Sobic.005G025300 dehydrogenase-phosphopantetheinyltransferase, putative, expressed K06133: LYS5, 4'-phosphopantetheinyl transferase
16 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
17 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
18 Sobic.010G055800 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
19 Sobic.009G137900 OsFBL9 - F-box domain and LRR containing protein, expressed -
20 Sobic.002G292800 MORN repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic001G373400 Sobic001G373400 Sobic001G246500 Sobic001G246500 Sobic001G373400--Sobic001G246500 Sobic003G413100 Sobic003G413100 Sobic001G373400--Sobic003G413100 Sobic008G173100 Sobic008G173100 Sobic001G373400--Sobic008G173100 Sobic001G155400 Sobic001G155400 Sobic001G373400--Sobic001G155400 Sobic002G063900 Sobic002G063900 Sobic001G373400--Sobic002G063900 Sobic010G096000 Sobic010G096000 Sobic001G373400--Sobic010G096000 Sobic001G042200 Sobic001G042200 Sobic001G373400--Sobic001G042200 Sobic009G074700 Sobic009G074700 Sobic001G373400--Sobic009G074700 Sobic009G126600 Sobic009G126600 Sobic001G373400--Sobic009G126600 Sobic001G246500--Sobic008G173100 Sobic001G246500--Sobic010G096000 Sobic001G246500--Sobic009G074700 Sobic002G259800 Sobic002G259800 Sobic001G246500--Sobic002G259800 Sobic001G306900 Sobic001G306900 Sobic001G246500--Sobic001G306900 Sobic009G195200 Sobic009G195200 Sobic001G246500--Sobic009G195200 Sobic004G086200 Sobic004G086200 Sobic001G246500--Sobic004G086200 Sobic006G013500 Sobic006G013500 Sobic001G246500--Sobic006G013500 Sobic009G151200 Sobic009G151200 Sobic001G246500--Sobic009G151200 Sobic003G413100--Sobic001G155400 Sobic007G016900 Sobic007G016900 Sobic003G413100--Sobic007G016900 Sobic003G413100--Sobic010G096000 Sobic003G413100--Sobic001G373400 Sobic002G292800 Sobic002G292800 Sobic003G413100--Sobic002G292800 Sobic006G245900 Sobic006G245900 Sobic003G413100--Sobic006G245900 Sobic004G345400 Sobic004G345400 Sobic003G413100--Sobic004G345400 Sobic009G040800 Sobic009G040800 Sobic003G413100--Sobic009G040800 Sobic003G413100--Sobic001G042200 Sobic002G260400 Sobic002G260400 Sobic008G173100--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic008G173100--Sobic007G090430 Sobic006G116100 Sobic006G116100 Sobic008G173100--Sobic006G116100 Sobic008G173100--Sobic002G063900 Sobic002G264200 Sobic002G264200 Sobic008G173100--Sobic002G264200 Sobic010G236400 Sobic010G236400 Sobic008G173100--Sobic010G236400 Sobic008G153000 Sobic008G153000 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic010G245000 Sobic010G245000 Sobic008G173100--Sobic010G245000 Sobic002G425500 Sobic002G425500 Sobic001G155400--Sobic002G425500 Sobic001G035200 Sobic001G035200 Sobic001G155400--Sobic001G035200 Sobic001G155400--Sobic003G413100 Sobic001G155400--Sobic010G096000 Sobic001G155400--Sobic002G063900 Sobic010G145800 Sobic010G145800 Sobic001G155400--Sobic010G145800 Sobic010G140400 Sobic010G140400 Sobic001G155400--Sobic010G140400 Sobic001G155400--Sobic008G173100 Sobic001G020000 Sobic001G020000 Sobic001G155400--Sobic001G020000 Sobic002G063900--Sobic008G173100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G063900--Sobic002G260400 Sobic002G063900--Sobic007G090430 Sobic004G246100 Sobic004G246100 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic008G149800 Sobic008G149800 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic010G096000--Sobic001G246500 Sobic008G100100 Sobic008G100100 Sobic010G096000--Sobic008G100100 Sobic010G096000--Sobic004G086200 Sobic010G096000--Sobic001G306900 Sobic001G346900 Sobic001G346900 Sobic010G096000--Sobic001G346900 Sobic010G096000--Sobic008G173100 Sobic003G416700 Sobic003G416700 Sobic010G096000--Sobic003G416700 Sobic010G096000--Sobic001G155400 Sobic008G147200 Sobic008G147200 Sobic010G096000--Sobic008G147200 Sobic010G077500 Sobic010G077500 Sobic001G042200--Sobic010G077500 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic007G042900 Sobic007G042900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic009G074700--Sobic001G246500 Sobic010G202600 Sobic010G202600 Sobic009G074700--Sobic010G202600 Sobic010G278600 Sobic010G278600 Sobic009G074700--Sobic010G278600 Sobic006G180700 Sobic006G180700 Sobic009G074700--Sobic006G180700 Sobic009G074700--Sobic002G259800 Sobic009G000400 Sobic009G000400 Sobic009G074700--Sobic009G000400 Sobic002G262700 Sobic002G262700 Sobic009G074700--Sobic002G262700 Sobic009G074700--Sobic009G195200 Sobic006G138000 Sobic006G138000 Sobic009G074700--Sobic006G138000 Sobic001G222500 Sobic001G222500 Sobic009G126600--Sobic001G222500 Sobic010G185400 Sobic010G185400 Sobic009G126600--Sobic010G185400 Sobic006G165000 Sobic006G165000 Sobic009G126600--Sobic006G165000 Sobic001G155000 Sobic001G155000 Sobic009G126600--Sobic001G155000 Sobic002G357700 Sobic002G357700 Sobic009G126600--Sobic002G357700 Sobic001G407200 Sobic001G407200 Sobic009G126600--Sobic001G407200 Sobic009G126600--Sobic008G149800 Sobic003G241200 Sobic003G241200 Sobic009G126600--Sobic003G241200 Sobic005G013200 Sobic005G013200 Sobic009G126600--Sobic005G013200
Octagon: transcription factors


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