Gene annotation
Transcriptome id Sobic.003G413100.2,Sobic.003G413100.1
Synonym Sb03g044750
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt C5XH11 , A0A1W0W197
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF457
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G51030 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os01g70430.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026172
Brachypodium KQK15697 , KQK11336
Barley HORVU3Hr1G096690.8 , HORVU3Hr1G096690.6 , HORVU3Hr1G096690.5 , HORVU3Hr1G096690.4 , HORVU3Hr1G096690.3
Wheat -
Populus -


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cDNA sequences
Sobic.003G413100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
2 Sobic.007G016900 OsFBL26 - F-box domain and LRR containing protein, expressed -
3 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
4 Sobic.001G373400 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
5 Sobic.002G292800 MORN repeat domain containing protein, expressed -
6 Sobic.006G245900 FAR1 family protein, expressed -
7 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
8 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
9 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
10 Sobic.008G147200 tubulin, putative, expressed -
11 Sobic.003G416700 homeobox domain containing protein, expressed -
12 Sobic.007G056700 AP2/EREBP transcription factor BABY BOOM, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
13 Sobic.002G357700 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
14 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
15 Sobic.002G063900 zinc ion binding protein, putative, expressed -
16 Sobic.003G297500 glucosidase 2 subunit beta precursor, putative, expressed K08288: protein kinase C substrate 80K-H
17 Sobic.010G099800 growth regulator related protein, putative, expressed -
18 Sobic.007G187600 pentatricopeptide, putative, expressed -
19 Sobic.001G085700 STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
20 Sobic.001G010300 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic003G413100 Sobic003G413100 Sobic001G155400 Sobic001G155400 Sobic003G413100--Sobic001G155400 Sobic007G016900 Sobic007G016900 Sobic003G413100--Sobic007G016900 Sobic010G096000 Sobic010G096000 Sobic003G413100--Sobic010G096000 Sobic001G373400 Sobic001G373400 Sobic003G413100--Sobic001G373400 Sobic002G292800 Sobic002G292800 Sobic003G413100--Sobic002G292800 Sobic006G245900 Sobic006G245900 Sobic003G413100--Sobic006G245900 Sobic004G345400 Sobic004G345400 Sobic003G413100--Sobic004G345400 Sobic009G040800 Sobic009G040800 Sobic003G413100--Sobic009G040800 Sobic001G042200 Sobic001G042200 Sobic003G413100--Sobic001G042200 Sobic002G425500 Sobic002G425500 Sobic001G155400--Sobic002G425500 Sobic001G035200 Sobic001G035200 Sobic001G155400--Sobic001G035200 Sobic001G155400--Sobic003G413100 Sobic001G155400--Sobic010G096000 Sobic002G063900 Sobic002G063900 Sobic001G155400--Sobic002G063900 Sobic010G145800 Sobic010G145800 Sobic001G155400--Sobic010G145800 Sobic010G140400 Sobic010G140400 Sobic001G155400--Sobic010G140400 Sobic008G173100 Sobic008G173100 Sobic001G155400--Sobic008G173100 Sobic001G020000 Sobic001G020000 Sobic001G155400--Sobic001G020000 Sobic007G016900--Sobic006G245900 Sobic007G187600 Sobic007G187600 Sobic007G016900--Sobic007G187600 Sobic007G016900--Sobic003G413100 Sobic003G010900 Sobic003G010900 Sobic007G016900--Sobic003G010900 Sobic007G016900--Sobic004G345400 Sobic007G016900--Sobic001G042200 Sobic002G343200 Sobic002G343200 Sobic007G016900--Sobic002G343200 Sobic003G113300 Sobic003G113300 Sobic007G016900--Sobic003G113300 Sobic007G016900--Sobic009G040800 Sobic001G246500 Sobic001G246500 Sobic010G096000--Sobic001G246500 Sobic008G100100 Sobic008G100100 Sobic010G096000--Sobic008G100100 Sobic004G086200 Sobic004G086200 Sobic010G096000--Sobic004G086200 Sobic001G306900 Sobic001G306900 Sobic010G096000--Sobic001G306900 Sobic001G346900 Sobic001G346900 Sobic010G096000--Sobic001G346900 Sobic010G096000--Sobic008G173100 Sobic003G416700 Sobic003G416700 Sobic010G096000--Sobic003G416700 Sobic010G096000--Sobic001G155400 Sobic008G147200 Sobic008G147200 Sobic010G096000--Sobic008G147200 Sobic001G373400--Sobic001G246500 Sobic001G373400--Sobic003G413100 Sobic001G373400--Sobic008G173100 Sobic001G373400--Sobic001G155400 Sobic001G373400--Sobic002G063900 Sobic001G373400--Sobic010G096000 Sobic001G373400--Sobic001G042200 Sobic009G074700 Sobic009G074700 Sobic001G373400--Sobic009G074700 Sobic009G126600 Sobic009G126600 Sobic001G373400--Sobic009G126600 Sobic004G097900 Sobic004G097900 Sobic002G292800--Sobic004G097900 Sobic002G292800--Sobic006G245900 Sobic002G079100 Sobic002G079100 Sobic002G292800--Sobic002G079100 Sobic002G386900 Sobic002G386900 Sobic002G292800--Sobic002G386900 Sobic006G191200 Sobic006G191200 Sobic002G292800--Sobic006G191200 Sobic002G292800--Sobic002G063900 Sobic003G124600 Sobic003G124600 Sobic002G292800--Sobic003G124600 Sobic006G170900 Sobic006G170900 Sobic002G292800--Sobic006G170900 Sobic001G495400 Sobic001G495400 Sobic002G292800--Sobic001G495400 Sobic002G371600 Sobic002G371600 Sobic006G245900--Sobic002G371600 Sobic002G296400 Sobic002G296400 Sobic006G245900--Sobic002G296400 Sobic004G031300 Sobic004G031300 Sobic006G245900--Sobic004G031300 Sobic006G245900--Sobic007G016900 Sobic006G245900--Sobic002G292800 Sobic007G145400 Sobic007G145400 Sobic006G245900--Sobic007G145400 Sobic002G252100 Sobic002G252100 Sobic006G245900--Sobic002G252100 Sobic003G308500 Sobic003G308500 Sobic006G245900--Sobic003G308500 Sobic006G245900--Sobic001G346900 Sobic004G345400--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic004G345400--Sobic010G077500 Sobic009G249700 Sobic009G249700 Sobic004G345400--Sobic009G249700 Sobic007G042900 Sobic007G042900 Sobic004G345400--Sobic007G042900 Sobic004G180900 Sobic004G180900 Sobic004G345400--Sobic004G180900 Sobic006G186400 Sobic006G186400 Sobic004G345400--Sobic006G186400 Sobic004G084500 Sobic004G084500 Sobic004G345400--Sobic004G084500 Sobic007G056500 Sobic007G056500 Sobic004G345400--Sobic007G056500 Sobic003G394200 Sobic003G394200 Sobic004G345400--Sobic003G394200 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic006G091000 Sobic006G091000 Sobic009G040800--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic001G042200--Sobic010G077500 Sobic001G042200--Sobic004G345400 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic001G042200--Sobic007G042900 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700
Octagon: transcription factors


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