Gene annotation
Transcriptome id Sobic.006G058800.1
Synonym Sb06g014710
Functional annotation tRNA synthetase class II core domain containing protein, expressed
UniProt A0A1Z5RD75
Pfam PF00587 PF03129
Panther DB PTHR10745 PTHR10745:SF5
NCBI CDD -
KEGG Orthology K01880; GARS, glycyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT1G29880 : glycyl-tRNA synthetase / glycine--tRNA ligase
RAP-DB (Rice) LOC_Os04g32650.1 : tRNA synthetase class II core domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005318 , Zm00025a011661
Brachypodium -
Barley HORVU2Hr1G071330.8 , HORVU2Hr1G071330.9 , HORVU2Hr1G071330.2 , HORVU2Hr1G071330.3 , HORVU2Hr1G071330.1 , HORVU2Hr1G071330.6 , HORVU2Hr1G071330.7 , HORVU2Hr1G071330.4 , HORVU2Hr1G071330.5 , HORVU2Hr1G071330.10 , HORVU2Hr1G071330.11
Wheat TraesCS2A02G288100 , TraesCS2B02G304900 , TraesCS2D02G286400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
2 Sobic.006G089400 cleft lip and palate transmembrane protein 1, putative, expressed -
3 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
4 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
5 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
6 Sobic.004G176000 "SDG725(Ortholog in rice:Sui et al., 2012)"(PubMedID : 31659884)@histone-lysine N-methyltransferase ASHH2, putative, expressed -
7 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
8 Sobic.002G092050 - -
9 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
10 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
11 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
12 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
13 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
14 Sobic.002G309200 FAR1 family protein, expressed -
15 Sobic.002G343200 homeodomain-like, putative, expressed -
16 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
17 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
18 Sobic.004G194100 expressed protein -
19 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
20 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -


Gene co-expression network
sample Sobic006G058800 Sobic006G058800 Sobic001G085800 Sobic001G085800 Sobic006G058800--Sobic001G085800 Sobic006G089400 Sobic006G089400 Sobic006G058800--Sobic006G089400 Sobic003G134000 Sobic003G134000 Sobic006G058800--Sobic003G134000 Sobic003G246000 Sobic003G246000 Sobic006G058800--Sobic003G246000 Sobic006G125900 Sobic006G125900 Sobic006G058800--Sobic006G125900 Sobic004G176000 Sobic004G176000 Sobic006G058800--Sobic004G176000 Sobic002G386600 Sobic002G386600 Sobic006G058800--Sobic002G386600 Sobic002G092050 Sobic002G092050 Sobic006G058800--Sobic002G092050 Sobic007G097400 Sobic007G097400 Sobic006G058800--Sobic007G097400 Sobic001G085800--Sobic003G246000 Sobic005G115500 Sobic005G115500 Sobic001G085800--Sobic005G115500 Sobic002G364900 Sobic002G364900 Sobic001G085800--Sobic002G364900 Sobic002G160700 Sobic002G160700 Sobic001G085800--Sobic002G160700 Sobic002G145800 Sobic002G145800 Sobic001G085800--Sobic002G145800 Sobic001G085800--Sobic006G058800 Sobic001G085800--Sobic002G386600 Sobic004G356200 Sobic004G356200 Sobic001G085800--Sobic004G356200 Sobic001G469200 Sobic001G469200 Sobic001G085800--Sobic001G469200 Sobic010G100800 Sobic010G100800 Sobic006G089400--Sobic010G100800 Sobic006G089400--Sobic006G058800 Sobic001G501300 Sobic001G501300 Sobic006G089400--Sobic001G501300 Sobic010G143500 Sobic010G143500 Sobic006G089400--Sobic010G143500 Sobic007G029500 Sobic007G029500 Sobic006G089400--Sobic007G029500 Sobic006G089400--Sobic003G134000 Sobic006G089400--Sobic004G176000 Sobic001G207200 Sobic001G207200 Sobic006G089400--Sobic001G207200 Sobic002G191100 Sobic002G191100 Sobic006G089400--Sobic002G191100 Sobic002G031700 Sobic002G031700 Sobic003G134000--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic003G134000--Sobic002G155000 Sobic003G134000--Sobic006G058800 Sobic007G075800 Sobic007G075800 Sobic003G134000--Sobic007G075800 Sobic002G428800 Sobic002G428800 Sobic003G134000--Sobic002G428800 Sobic003G134000--Sobic010G100800 Sobic003G134000--Sobic002G364900 Sobic008G165900 Sobic008G165900 Sobic003G134000--Sobic008G165900 Sobic003G134000--Sobic002G092050 Sobic003G246000--Sobic001G085800 Sobic001G408600 Sobic001G408600 Sobic003G246000--Sobic001G408600 Sobic004G141800 Sobic004G141800 Sobic003G246000--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic003G246000--Sobic002G430300 Sobic001G145400 Sobic001G145400 Sobic003G246000--Sobic001G145400 Sobic003G246000--Sobic002G386600 Sobic003G246000--Sobic006G125900 Sobic003G246000--Sobic002G160700 Sobic005G199200 Sobic005G199200 Sobic003G246000--Sobic005G199200 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic001G214600 Sobic001G214600 Sobic004G176000--Sobic001G214600 Sobic001G352900 Sobic001G352900 Sobic004G176000--Sobic001G352900 Sobic001G261900 Sobic001G261900 Sobic004G176000--Sobic001G261900 Sobic010G053600 Sobic010G053600 Sobic004G176000--Sobic010G053600 Sobic004G023100 Sobic004G023100 Sobic004G176000--Sobic004G023100 Sobic004G260100 Sobic004G260100 Sobic004G176000--Sobic004G260100 Sobic001G493200 Sobic001G493200 Sobic004G176000--Sobic001G493200 Sobic006G210000 Sobic006G210000 Sobic004G176000--Sobic006G210000 Sobic007G212300 Sobic007G212300 Sobic004G176000--Sobic007G212300 Sobic002G386900 Sobic002G386900 Sobic002G386600--Sobic002G386900 Sobic006G029100 Sobic006G029100 Sobic002G386600--Sobic006G029100 Sobic002G386600--Sobic004G141800 Sobic006G265600 Sobic006G265600 Sobic002G386600--Sobic006G265600 Sobic002G398700 Sobic002G398700 Sobic002G386600--Sobic002G398700 Sobic002G386600--Sobic002G160700 Sobic002G386600--Sobic001G085800 Sobic003G397900 Sobic003G397900 Sobic002G386600--Sobic003G397900 Sobic002G386600--Sobic003G246000 Sobic002G378100 Sobic002G378100 Sobic002G092050--Sobic002G378100 Sobic006G128400 Sobic006G128400 Sobic002G092050--Sobic006G128400 Sobic006G193300 Sobic006G193300 Sobic002G092050--Sobic006G193300 Sobic008G038600 Sobic008G038600 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic002G092050--Sobic006G125900 Sobic002G092050--Sobic007G097400 Sobic001G501400 Sobic001G501400 Sobic002G092050--Sobic001G501400 Sobic002G238000 Sobic002G238000 Sobic002G092050--Sobic002G238000 Sobic009G213200 Sobic009G213200 Sobic007G097400--Sobic009G213200 Sobic001G276200 Sobic001G276200 Sobic007G097400--Sobic001G276200 Sobic007G097400--Sobic010G100800 Sobic007G097400--Sobic004G171200 Sobic001G450000 Sobic001G450000 Sobic007G097400--Sobic001G450000 Sobic003G209400 Sobic003G209400 Sobic007G097400--Sobic003G209400 Sobic007G097400--Sobic006G128400 Sobic007G097400--Sobic006G125900 Sobic006G137600 Sobic006G137600 Sobic007G097400--Sobic006G137600
Octagon: transcription factors


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