Gene annotation
Transcriptome id Sobic.005G169600.1,Sobic.005G169600.2
Synonym CFM3A, ATCFM3A, Sb05g022980
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed
UniProt A0A1Z5RJ30 , A0A1Z5RJN4
Pfam PF01985
Panther DB PTHR31846 PTHR31846:SF13
NCBI CDD KOG1990; Poly(A)-specific exoribonuclease PARN
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G23070 : CRM family member 3A
RAP-DB (Rice) LOC_Os11g37990.1 : chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a015834
Brachypodium KQJ88010
Barley HORVU7Hr1G052190.1 , HORVU7Hr1G052190.2 , HORVU7Hr1G052190.3 , HORVU7Hr1G052190.4
Wheat TraesCS4A02G150500 , TraesCS4B02G161000 , TraesCS4B02G161000 , TraesCS4D02G150700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
2 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
3 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
4 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
5 Sobic.003G342700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
6 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
7 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
8 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
9 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
10 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
11 Sobic.001G388400 expressed protein -
12 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
13 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
14 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
15 Sobic.001G426400 expressed protein -
16 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
17 Sobic.003G039300 expressed protein -
18 Sobic.010G074200 - -
19 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
20 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -


Gene co-expression network
sample Sobic005G169600 Sobic005G169600 Sobic009G238100 Sobic009G238100 Sobic005G169600--Sobic009G238100 Sobic006G204100 Sobic006G204100 Sobic005G169600--Sobic006G204100 Sobic009G036300 Sobic009G036300 Sobic005G169600--Sobic009G036300 Sobic007G227600 Sobic007G227600 Sobic005G169600--Sobic007G227600 Sobic003G342700 Sobic003G342700 Sobic005G169600--Sobic003G342700 Sobic002G038300 Sobic002G038300 Sobic005G169600--Sobic002G038300 Sobic002G404900 Sobic002G404900 Sobic005G169600--Sobic002G404900 Sobic009G234200 Sobic009G234200 Sobic005G169600--Sobic009G234200 Sobic003G030400 Sobic003G030400 Sobic005G169600--Sobic003G030400 Sobic008G148400 Sobic008G148400 Sobic009G238100--Sobic008G148400 Sobic001G426400 Sobic001G426400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic009G238100--Sobic005G169600 Sobic009G238100--Sobic009G036300 Sobic009G238100--Sobic003G030400 Sobic009G238100--Sobic007G227600 Sobic009G238100--Sobic002G038300 Sobic010G074200 Sobic010G074200 Sobic006G204100--Sobic010G074200 Sobic008G072300 Sobic008G072300 Sobic006G204100--Sobic008G072300 Sobic001G388400 Sobic001G388400 Sobic006G204100--Sobic001G388400 Sobic006G204100--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic006G204100--Sobic003G330100 Sobic009G233800 Sobic009G233800 Sobic006G204100--Sobic009G233800 Sobic010G028000 Sobic010G028000 Sobic006G204100--Sobic010G028000 Sobic006G204100--Sobic007G227600 Sobic004G250200 Sobic004G250200 Sobic006G204100--Sobic004G250200 Sobic009G036300--Sobic007G227600 Sobic009G036300--Sobic001G388400 Sobic009G036300--Sobic010G074200 Sobic009G036300--Sobic010G028000 Sobic010G074100 Sobic010G074100 Sobic009G036300--Sobic010G074100 Sobic010G211500 Sobic010G211500 Sobic009G036300--Sobic010G211500 Sobic009G036300--Sobic009G234200 Sobic009G036300--Sobic006G204100 Sobic002G163700 Sobic002G163700 Sobic009G036300--Sobic002G163700 Sobic007G227600--Sobic010G074100 Sobic007G227600--Sobic009G036300 Sobic007G227600--Sobic001G388400 Sobic007G227600--Sobic009G234200 Sobic007G227600--Sobic010G028000 Sobic007G227600--Sobic010G074200 Sobic007G227600--Sobic009G253000 Sobic007G227600--Sobic010G211500 Sobic007G227600--Sobic002G163700 Sobic003G342700--Sobic002G404900 Sobic003G342700--Sobic005G169600 Sobic003G342700--Sobic009G234200 Sobic003G342700--Sobic002G038300 Sobic003G342700--Sobic006G204100 Sobic006G237100 Sobic006G237100 Sobic003G342700--Sobic006G237100 Sobic001G161400 Sobic001G161400 Sobic003G342700--Sobic001G161400 Sobic003G291300 Sobic003G291300 Sobic003G342700--Sobic003G291300 Sobic003G342700--Sobic008G072300 Sobic002G386400 Sobic002G386400 Sobic002G038300--Sobic002G386400 Sobic001G161300 Sobic001G161300 Sobic002G038300--Sobic001G161300 Sobic002G038300--Sobic002G163700 Sobic002G038300--Sobic001G388400 Sobic002G038300--Sobic009G234200 Sobic009G138900 Sobic009G138900 Sobic002G038300--Sobic009G138900 Sobic003G208300 Sobic003G208300 Sobic002G038300--Sobic003G208300 Sobic001G450600 Sobic001G450600 Sobic002G038300--Sobic001G450600 Sobic002G038300--Sobic010G028000 Sobic002G404900--Sobic006G237100 Sobic009G137000 Sobic009G137000 Sobic002G404900--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic002G404900--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G404900--Sobic001G437200 Sobic002G404900--Sobic009G036300 Sobic002G404900--Sobic001G161400 Sobic005G009300 Sobic005G009300 Sobic002G404900--Sobic005G009300 Sobic001G445200 Sobic001G445200 Sobic002G404900--Sobic001G445200 Sobic002G404900--Sobic006G204100 Sobic009G234200--Sobic001G388400 Sobic009G234200--Sobic010G028000 Sobic010G183400 Sobic010G183400 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic003G245800 Sobic003G245800 Sobic009G234200--Sobic003G245800 Sobic006G111600 Sobic006G111600 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic003G222600 Sobic003G222600 Sobic003G030400--Sobic003G222600 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic001G076200 Sobic001G076200 Sobic003G030400--Sobic001G076200 Sobic003G030400--Sobic009G238100 Sobic003G030400--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic003G030400--Sobic001G114400 Sobic004G070200 Sobic004G070200 Sobic003G030400--Sobic004G070200 Sobic004G249500 Sobic004G249500 Sobic003G030400--Sobic004G249500
Octagon: transcription factors


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