Gene annotation
Transcriptome id Sobic.003G342700.1
Synonym Sb03g038680
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
thioredoxin, putative, expressed
UniProt C5XNY3
Pfam -
Panther DB PTHR34669 PTHR34669:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28590 : -
RAP-DB (Rice) LOC_Os01g61320.2 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a027008
Brachypodium KQK10401
Barley HORVU3Hr1G087940.1 , HORVU3Hr1G087940.3 , HORVU3Hr1G087940.2 , HORVU3Hr1G087940.5 , HORVU3Hr1G087940.4 , HORVU3Hr1G087940.6
Wheat TraesCS3A02G349000 , TraesCS3D02G342900 , TraesCS3B02G381100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
2 Sobic.005G169600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
3 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
4 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
5 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
6 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
7 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
8 Sobic.003G291300 RNA methyltransferase, TrmH family protein, putative, expressed K15507: MRM1, 21S rRNA (GM2251-2'-O)-methyltransferase
9 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
11 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
12 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
13 Sobic.003G039300 expressed protein -
14 Sobic.003G075100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
15 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
16 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
17 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
18 Sobic.008G130900 ribosomal protein S6, putative, expressed -
19 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
20 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -


Gene co-expression network
sample Sobic003G342700 Sobic003G342700 Sobic002G404900 Sobic002G404900 Sobic003G342700--Sobic002G404900 Sobic005G169600 Sobic005G169600 Sobic003G342700--Sobic005G169600 Sobic009G234200 Sobic009G234200 Sobic003G342700--Sobic009G234200 Sobic002G038300 Sobic002G038300 Sobic003G342700--Sobic002G038300 Sobic006G204100 Sobic006G204100 Sobic003G342700--Sobic006G204100 Sobic006G237100 Sobic006G237100 Sobic003G342700--Sobic006G237100 Sobic001G161400 Sobic001G161400 Sobic003G342700--Sobic001G161400 Sobic003G291300 Sobic003G291300 Sobic003G342700--Sobic003G291300 Sobic008G072300 Sobic008G072300 Sobic003G342700--Sobic008G072300 Sobic002G404900--Sobic006G237100 Sobic009G137000 Sobic009G137000 Sobic002G404900--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic002G404900--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G404900--Sobic001G437200 Sobic009G036300 Sobic009G036300 Sobic002G404900--Sobic009G036300 Sobic002G404900--Sobic001G161400 Sobic005G009300 Sobic005G009300 Sobic002G404900--Sobic005G009300 Sobic001G445200 Sobic001G445200 Sobic002G404900--Sobic001G445200 Sobic002G404900--Sobic006G204100 Sobic009G238100 Sobic009G238100 Sobic005G169600--Sobic009G238100 Sobic005G169600--Sobic006G204100 Sobic005G169600--Sobic009G036300 Sobic007G227600 Sobic007G227600 Sobic005G169600--Sobic007G227600 Sobic005G169600--Sobic003G342700 Sobic005G169600--Sobic002G038300 Sobic005G169600--Sobic002G404900 Sobic005G169600--Sobic009G234200 Sobic003G030400 Sobic003G030400 Sobic005G169600--Sobic003G030400 Sobic001G388400 Sobic001G388400 Sobic009G234200--Sobic001G388400 Sobic010G028000 Sobic010G028000 Sobic009G234200--Sobic010G028000 Sobic010G183400 Sobic010G183400 Sobic009G234200--Sobic010G183400 Sobic003G330100 Sobic003G330100 Sobic009G234200--Sobic003G330100 Sobic004G250200 Sobic004G250200 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic003G245800 Sobic003G245800 Sobic009G234200--Sobic003G245800 Sobic006G111600 Sobic006G111600 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic002G386400 Sobic002G386400 Sobic002G038300--Sobic002G386400 Sobic001G161300 Sobic001G161300 Sobic002G038300--Sobic001G161300 Sobic002G163700 Sobic002G163700 Sobic002G038300--Sobic002G163700 Sobic002G038300--Sobic001G388400 Sobic002G038300--Sobic009G234200 Sobic009G138900 Sobic009G138900 Sobic002G038300--Sobic009G138900 Sobic003G208300 Sobic003G208300 Sobic002G038300--Sobic003G208300 Sobic001G450600 Sobic001G450600 Sobic002G038300--Sobic001G450600 Sobic002G038300--Sobic010G028000 Sobic010G074200 Sobic010G074200 Sobic006G204100--Sobic010G074200 Sobic006G204100--Sobic008G072300 Sobic006G204100--Sobic001G388400 Sobic006G204100--Sobic009G234200 Sobic006G204100--Sobic003G330100 Sobic009G233800 Sobic009G233800 Sobic006G204100--Sobic009G233800 Sobic006G204100--Sobic010G028000 Sobic006G204100--Sobic007G227600 Sobic006G204100--Sobic004G250200 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic010G027200 Sobic010G027200 Sobic006G237100--Sobic010G027200 Sobic001G375000 Sobic001G375000 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic002G140000 Sobic002G140000 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic006G237100--Sobic001G437200 Sobic007G116100 Sobic007G116100 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic001G161400--Sobic006G237100 Sobic003G039300 Sobic003G039300 Sobic001G161400--Sobic003G039300 Sobic001G161400--Sobic006G204100 Sobic001G161400--Sobic003G330100 Sobic001G161400--Sobic002G404900 Sobic003G444500 Sobic003G444500 Sobic001G161400--Sobic003G444500 Sobic001G161400--Sobic009G234200 Sobic003G084500 Sobic003G084500 Sobic001G161400--Sobic003G084500 Sobic003G286300 Sobic003G286300 Sobic001G161400--Sobic003G286300 Sobic003G291300--Sobic003G342700 Sobic003G291300--Sobic002G404900 Sobic003G291300--Sobic006G204100 Sobic003G291300--Sobic008G072300 Sobic003G291300--Sobic009G234200 Sobic003G291300--Sobic005G169600 Sobic007G171800 Sobic007G171800 Sobic003G291300--Sobic007G171800 Sobic003G291300--Sobic006G237100 Sobic003G291300--Sobic001G395300 Sobic008G072300--Sobic006G204100 Sobic008G072300--Sobic003G330100 Sobic003G221700 Sobic003G221700 Sobic008G072300--Sobic003G221700 Sobic008G072300--Sobic009G234200 Sobic008G072300--Sobic006G111600 Sobic002G345200 Sobic002G345200 Sobic008G072300--Sobic002G345200 Sobic007G034500 Sobic007G034500 Sobic008G072300--Sobic007G034500 Sobic008G072300--Sobic010G074200 Sobic008G072300--Sobic004G250200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.