Gene annotation
Transcriptome id Sobic.003G291300.1
Synonym Sb03g034180
Functional annotation RNA methyltransferase, TrmH family protein, putative, expressed
UniProt A0A1W0VZG2
Pfam PF08032 PF00588
Panther DB PTHR12029 PTHR12029:SF58
NCBI CDD KOG0838; RNA Methylase, SpoU family
KEGG Orthology K15507; MRM1, 21S rRNA (GM2251-2'-O)-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0008173RNA methyltransferase activity GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT2G19870 : tRNA/rRNA methyltransferase (SpoU) family protein
RAP-DB (Rice) LOC_Os01g53890.1 : RNA methyltransferase, TrmH family protein, putative, expressed
MaizeGDB (Corn) Zm00025a040076
Brachypodium KQK09666
Barley HORVU3Hr1G070610.5 , HORVU7Hr1G091320.1 , HORVU3Hr1G070610.3 , HORVU3Hr1G070610.2 , HORVU3Hr1G070610.1 , HORVU3Hr1G070610.4
Wheat TraesCS3B02G310400 , TraesCS3D02G276500 , TraesCS3A02G276400 , TraesCS3A02G276400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G342700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
2 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
3 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
4 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
6 Sobic.005G169600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
7 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
8 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
9 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.009G138900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
12 Sobic.007G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
13 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
14 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
15 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
16 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
17 Sobic.002G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
19 Sobic.001G228300 SAP domain containing protein, expressed -
20 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -


Gene co-expression network
sample Sobic003G291300 Sobic003G291300 Sobic003G342700 Sobic003G342700 Sobic003G291300--Sobic003G342700 Sobic002G404900 Sobic002G404900 Sobic003G291300--Sobic002G404900 Sobic006G204100 Sobic006G204100 Sobic003G291300--Sobic006G204100 Sobic008G072300 Sobic008G072300 Sobic003G291300--Sobic008G072300 Sobic009G234200 Sobic009G234200 Sobic003G291300--Sobic009G234200 Sobic005G169600 Sobic005G169600 Sobic003G291300--Sobic005G169600 Sobic007G171800 Sobic007G171800 Sobic003G291300--Sobic007G171800 Sobic006G237100 Sobic006G237100 Sobic003G291300--Sobic006G237100 Sobic001G395300 Sobic001G395300 Sobic003G291300--Sobic001G395300 Sobic003G342700--Sobic002G404900 Sobic003G342700--Sobic005G169600 Sobic003G342700--Sobic009G234200 Sobic002G038300 Sobic002G038300 Sobic003G342700--Sobic002G038300 Sobic003G342700--Sobic006G204100 Sobic003G342700--Sobic006G237100 Sobic001G161400 Sobic001G161400 Sobic003G342700--Sobic001G161400 Sobic003G342700--Sobic003G291300 Sobic003G342700--Sobic008G072300 Sobic002G404900--Sobic006G237100 Sobic009G137000 Sobic009G137000 Sobic002G404900--Sobic009G137000 Sobic002G404900--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G404900--Sobic001G437200 Sobic009G036300 Sobic009G036300 Sobic002G404900--Sobic009G036300 Sobic002G404900--Sobic001G161400 Sobic005G009300 Sobic005G009300 Sobic002G404900--Sobic005G009300 Sobic001G445200 Sobic001G445200 Sobic002G404900--Sobic001G445200 Sobic002G404900--Sobic006G204100 Sobic010G074200 Sobic010G074200 Sobic006G204100--Sobic010G074200 Sobic006G204100--Sobic008G072300 Sobic001G388400 Sobic001G388400 Sobic006G204100--Sobic001G388400 Sobic006G204100--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic006G204100--Sobic003G330100 Sobic009G233800 Sobic009G233800 Sobic006G204100--Sobic009G233800 Sobic010G028000 Sobic010G028000 Sobic006G204100--Sobic010G028000 Sobic007G227600 Sobic007G227600 Sobic006G204100--Sobic007G227600 Sobic004G250200 Sobic004G250200 Sobic006G204100--Sobic004G250200 Sobic008G072300--Sobic006G204100 Sobic008G072300--Sobic003G330100 Sobic003G221700 Sobic003G221700 Sobic008G072300--Sobic003G221700 Sobic008G072300--Sobic009G234200 Sobic006G111600 Sobic006G111600 Sobic008G072300--Sobic006G111600 Sobic002G345200 Sobic002G345200 Sobic008G072300--Sobic002G345200 Sobic007G034500 Sobic007G034500 Sobic008G072300--Sobic007G034500 Sobic008G072300--Sobic010G074200 Sobic008G072300--Sobic004G250200 Sobic009G234200--Sobic001G388400 Sobic009G234200--Sobic010G028000 Sobic010G183400 Sobic010G183400 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic003G245800 Sobic003G245800 Sobic009G234200--Sobic003G245800 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic009G238100 Sobic009G238100 Sobic005G169600--Sobic009G238100 Sobic005G169600--Sobic006G204100 Sobic005G169600--Sobic009G036300 Sobic005G169600--Sobic007G227600 Sobic005G169600--Sobic003G342700 Sobic005G169600--Sobic002G038300 Sobic005G169600--Sobic002G404900 Sobic005G169600--Sobic009G234200 Sobic003G030400 Sobic003G030400 Sobic005G169600--Sobic003G030400 Sobic010G011200 Sobic010G011200 Sobic007G171800--Sobic010G011200 Sobic005G110481 Sobic005G110481 Sobic007G171800--Sobic005G110481 Sobic002G251400 Sobic002G251400 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic001G148200 Sobic001G148200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic010G027200 Sobic010G027200 Sobic006G237100--Sobic010G027200 Sobic001G375000 Sobic001G375000 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic002G140000 Sobic002G140000 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic006G237100--Sobic001G437200 Sobic007G116100 Sobic007G116100 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic001G395300--Sobic009G137000 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic001G395300--Sobic002G140000 Sobic001G395300--Sobic006G204100 Sobic001G395300--Sobic007G116100 Sobic001G395300--Sobic010G027200
Octagon: transcription factors


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