Gene annotation
Transcriptome id Sobic.008G022701.1
Synonym -
Functional annotation -
UniProt A0A1B6PB74
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF329
NCBI CDD -
KEGG Orthology K17710; pentatricopeptide repeat domain-containing protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02150 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os06g36910.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a055019 , Zm00025a053755 , Zm00025a053756
Brachypodium -
Barley HORVU7Hr1G087760.5 , HORVU7Hr1G087760.4 , HORVU7Hr1G087760.7 , HORVU7Hr1G087760.6
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
2 Sobic.001G008000 PPR repeat domain containing protein, putative, expressed -
3 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
4 Sobic.002G052400 PPR repeat containing protein, expressed -
5 Sobic.007G145100 SGT1 protein, putative, expressed -
6 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
7 Sobic.001G157300 expressed protein K14793: ribosomal RNA-processing protein 9
8 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
9 Sobic.004G027300 expressed protein -
10 Sobic.001G394700 fip1 motif family protein, expressed -
11 Sobic.003G381400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
12 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
13 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
14 Sobic.001G367500 arginyl-tRNA synthetase, putative, expressed -
15 Sobic.002G377800 heat shock protein DnaJ, putative, expressed -
16 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
17 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
18 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
19 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
20 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial


Gene co-expression network
sample Sobic008G022701 Sobic008G022701 Sobic003G332900 Sobic003G332900 Sobic008G022701--Sobic003G332900 Sobic001G008000 Sobic001G008000 Sobic008G022701--Sobic001G008000 Sobic001G119600 Sobic001G119600 Sobic008G022701--Sobic001G119600 Sobic002G052400 Sobic002G052400 Sobic008G022701--Sobic002G052400 Sobic007G145100 Sobic007G145100 Sobic008G022701--Sobic007G145100 Sobic005G100900 Sobic005G100900 Sobic008G022701--Sobic005G100900 Sobic001G157300 Sobic001G157300 Sobic008G022701--Sobic001G157300 Sobic001G502600 Sobic001G502600 Sobic008G022701--Sobic001G502600 Sobic004G027300 Sobic004G027300 Sobic008G022701--Sobic004G027300 Sobic008G165900 Sobic008G165900 Sobic003G332900--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic003G332900--Sobic010G211500 Sobic004G231600 Sobic004G231600 Sobic003G332900--Sobic004G231600 Sobic001G207200 Sobic001G207200 Sobic003G332900--Sobic001G207200 Sobic003G332900--Sobic008G022701 Sobic002G131000 Sobic002G131000 Sobic003G332900--Sobic002G131000 Sobic001G224200 Sobic001G224200 Sobic003G332900--Sobic001G224200 Sobic009G238100 Sobic009G238100 Sobic003G332900--Sobic009G238100 Sobic006G128400 Sobic006G128400 Sobic003G332900--Sobic006G128400 Sobic001G008000--Sobic001G502600 Sobic010G041000 Sobic010G041000 Sobic001G008000--Sobic010G041000 Sobic007G059700 Sobic007G059700 Sobic001G008000--Sobic007G059700 Sobic001G008000--Sobic008G022701 Sobic006G273900 Sobic006G273900 Sobic001G008000--Sobic006G273900 Sobic010G153300 Sobic010G153300 Sobic001G008000--Sobic010G153300 Sobic001G008000--Sobic007G145100 Sobic001G008000--Sobic004G027300 Sobic004G305100 Sobic004G305100 Sobic001G008000--Sobic004G305100 Sobic002G262100 Sobic002G262100 Sobic001G119600--Sobic002G262100 Sobic010G224700 Sobic010G224700 Sobic001G119600--Sobic010G224700 Sobic003G123200 Sobic003G123200 Sobic001G119600--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic001G119600--Sobic003G425100 Sobic002G378100 Sobic002G378100 Sobic001G119600--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic001G119600--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G119600--Sobic008G049100 Sobic006G198600 Sobic006G198600 Sobic001G119600--Sobic006G198600 Sobic006G231800 Sobic006G231800 Sobic001G119600--Sobic006G231800 Sobic004G351800 Sobic004G351800 Sobic002G052400--Sobic004G351800 Sobic008G017100 Sobic008G017100 Sobic002G052400--Sobic008G017100 Sobic002G377800 Sobic002G377800 Sobic002G052400--Sobic002G377800 Sobic009G105200 Sobic009G105200 Sobic002G052400--Sobic009G105200 Sobic002G052400--Sobic007G145100 Sobic001G261900 Sobic001G261900 Sobic002G052400--Sobic001G261900 Sobic002G373950 Sobic002G373950 Sobic002G052400--Sobic002G373950 Sobic002G052400--Sobic008G022701 Sobic010G228700 Sobic010G228700 Sobic002G052400--Sobic010G228700 Sobic007G145100--Sobic002G377800 Sobic001G544500 Sobic001G544500 Sobic007G145100--Sobic001G544500 Sobic007G145100--Sobic010G228700 Sobic002G399200 Sobic002G399200 Sobic007G145100--Sobic002G399200 Sobic007G145100--Sobic002G052400 Sobic007G145100--Sobic005G100900 Sobic001G362300 Sobic001G362300 Sobic007G145100--Sobic001G362300 Sobic007G145100--Sobic001G119600 Sobic007G145100--Sobic008G022701 Sobic002G238000 Sobic002G238000 Sobic005G100900--Sobic002G238000 Sobic009G071700 Sobic009G071700 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic005G100900--Sobic003G425100 Sobic005G100900--Sobic001G119600 Sobic005G100900--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic005G100900--Sobic008G165900 Sobic001G157300--Sobic009G071700 Sobic001G157300--Sobic002G262100 Sobic001G157300--Sobic006G198600 Sobic001G157300--Sobic001G119600 Sobic006G251600 Sobic006G251600 Sobic001G157300--Sobic006G251600 Sobic001G157300--Sobic003G123200 Sobic007G137350 Sobic007G137350 Sobic001G157300--Sobic007G137350 Sobic001G157300--Sobic003G425100 Sobic001G157300--Sobic008G049100 Sobic001G502600--Sobic001G008000 Sobic001G502600--Sobic004G305100 Sobic001G502600--Sobic010G041000 Sobic001G502600--Sobic006G273900 Sobic001G502600--Sobic005G100900 Sobic003G209400 Sobic003G209400 Sobic001G502600--Sobic003G209400 Sobic002G155000 Sobic002G155000 Sobic001G502600--Sobic002G155000 Sobic001G502600--Sobic003G332900 Sobic001G190400 Sobic001G190400 Sobic001G502600--Sobic001G190400 Sobic004G151000 Sobic004G151000 Sobic004G027300--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic007G060600 Sobic007G060600 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic004G027300--Sobic003G425100 Sobic001G453500 Sobic001G453500 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic002G112600 Sobic002G112600 Sobic004G027300--Sobic002G112600
Octagon: transcription factors


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