Gene annotation
Transcriptome id Sobic.003G381400.1
Synonym SbERF41, Sb03g042110, ethylene response factor 41, CRF3
Functional annotation Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt A0A1B6Q7E1
Pfam PF00847
Panther DB PTHR31190 PTHR31190:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G27950 : cytokinin response factor 4
RAP-DB (Rice) LOC_Os05g25260.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032190 , Zm00025a028188 , Zm00025a026516 , Zm00025a009134 , Zm00025a020894 , Zm00025a020895 , Zm00025a022123 , Zm00025a038708 , Zm00025a033171
Brachypodium KQK06922 , KQJ83906 , KQJ83907 , KQK00491 , KQK03360 , KQK23628 , KQJ91651 , KQK00588 , KQK00586 , KQK10781
Barley HORVU7Hr1G037180.1 , HORVU7Hr1G037180.2 , HORVU6Hr1G074970.3 , HORVU6Hr1G074970.2 , HORVU6Hr1G074970.1 , HORVU6Hr1G062430.1 , HORVU6Hr1G062380.3 , HORVU6Hr1G062380.2 , HORVU6Hr1G062380.1 , HORVU6Hr1G062380.5 , HORVU6Hr1G062380.4 , HORVU1Hr1G055710.1 , HORVU1Hr1G055710.3 , HORVU4Hr1G080300.1 , HORVU3Hr1G059250.2 , HORVU3Hr1G059250.1
Wheat TraesCS2A02G373700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
2 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
3 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
4 Sobic.009G255100 hypersensitive-induced response protein, putative, expressed -
5 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms
6 Sobic.002G155900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
8 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
9 Sobic.002G287000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@flavin-containing monooxygenase family protein, putative, expressed K00485: dimethylaniline monooxygenase (N-oxide forming)
10 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
11 Sobic.001G367500 arginyl-tRNA synthetase, putative, expressed -
12 Sobic.001G179100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed -
13 Sobic.002G377800 heat shock protein DnaJ, putative, expressed -
14 Sobic.001G008000 PPR repeat domain containing protein, putative, expressed -
15 Sobic.002G201400 ZF-HD protein dimerisation region containing protein, expressed -
16 Sobic.003G255100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G324400 thymidine kinase, putative, expressed K00857: tdk, thymidine kinase
18 Sobic.005G194200 EARLY flowering protein, putative, expressed -
19 Sobic.010G079700 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
20 Sobic.001G145050 - -


Gene co-expression network
sample Sobic003G381400 Sobic003G381400 Sobic003G332900 Sobic003G332900 Sobic003G381400--Sobic003G332900 Sobic008G022701 Sobic008G022701 Sobic003G381400--Sobic008G022701 Sobic001G502600 Sobic001G502600 Sobic003G381400--Sobic001G502600 Sobic009G255100 Sobic009G255100 Sobic003G381400--Sobic009G255100 Sobic010G041000 Sobic010G041000 Sobic003G381400--Sobic010G041000 Sobic002G155900 Sobic002G155900 Sobic003G381400--Sobic002G155900 Sobic009G238100 Sobic009G238100 Sobic003G381400--Sobic009G238100 Sobic002G040800 Sobic002G040800 Sobic003G381400--Sobic002G040800 Sobic002G287000 Sobic002G287000 Sobic003G381400--Sobic002G287000 Sobic008G165900 Sobic008G165900 Sobic003G332900--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic003G332900--Sobic010G211500 Sobic004G231600 Sobic004G231600 Sobic003G332900--Sobic004G231600 Sobic001G207200 Sobic001G207200 Sobic003G332900--Sobic001G207200 Sobic003G332900--Sobic008G022701 Sobic002G131000 Sobic002G131000 Sobic003G332900--Sobic002G131000 Sobic001G224200 Sobic001G224200 Sobic003G332900--Sobic001G224200 Sobic003G332900--Sobic009G238100 Sobic006G128400 Sobic006G128400 Sobic003G332900--Sobic006G128400 Sobic008G022701--Sobic003G332900 Sobic001G008000 Sobic001G008000 Sobic008G022701--Sobic001G008000 Sobic001G119600 Sobic001G119600 Sobic008G022701--Sobic001G119600 Sobic002G052400 Sobic002G052400 Sobic008G022701--Sobic002G052400 Sobic007G145100 Sobic007G145100 Sobic008G022701--Sobic007G145100 Sobic005G100900 Sobic005G100900 Sobic008G022701--Sobic005G100900 Sobic001G157300 Sobic001G157300 Sobic008G022701--Sobic001G157300 Sobic008G022701--Sobic001G502600 Sobic004G027300 Sobic004G027300 Sobic008G022701--Sobic004G027300 Sobic001G502600--Sobic001G008000 Sobic004G305100 Sobic004G305100 Sobic001G502600--Sobic004G305100 Sobic001G502600--Sobic010G041000 Sobic006G273900 Sobic006G273900 Sobic001G502600--Sobic006G273900 Sobic001G502600--Sobic005G100900 Sobic003G209400 Sobic003G209400 Sobic001G502600--Sobic003G209400 Sobic002G155000 Sobic002G155000 Sobic001G502600--Sobic002G155000 Sobic001G502600--Sobic003G332900 Sobic001G190400 Sobic001G190400 Sobic001G502600--Sobic001G190400 Sobic001G145050 Sobic001G145050 Sobic009G255100--Sobic001G145050 Sobic002G366100 Sobic002G366100 Sobic009G255100--Sobic002G366100 Sobic002G041800 Sobic002G041800 Sobic009G255100--Sobic002G041800 Sobic006G060800 Sobic006G060800 Sobic009G255100--Sobic006G060800 Sobic001G340700 Sobic001G340700 Sobic009G255100--Sobic001G340700 Sobic001G005500 Sobic001G005500 Sobic009G255100--Sobic001G005500 Sobic002G271600 Sobic002G271600 Sobic009G255100--Sobic002G271600 Sobic002G195700 Sobic002G195700 Sobic009G255100--Sobic002G195700 Sobic002G265400 Sobic002G265400 Sobic009G255100--Sobic002G265400 Sobic010G041000--Sobic004G305100 Sobic004G111000 Sobic004G111000 Sobic010G041000--Sobic004G111000 Sobic003G098900 Sobic003G098900 Sobic010G041000--Sobic003G098900 Sobic010G041000--Sobic001G008000 Sobic003G361400 Sobic003G361400 Sobic010G041000--Sobic003G361400 Sobic010G041000--Sobic001G502600 Sobic002G110500 Sobic002G110500 Sobic010G041000--Sobic002G110500 Sobic004G038100 Sobic004G038100 Sobic010G041000--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic010G041000--Sobic007G059700 Sobic001G179100 Sobic001G179100 Sobic002G155900--Sobic001G179100 Sobic003G255100 Sobic003G255100 Sobic002G155900--Sobic003G255100 Sobic003G214000 Sobic003G214000 Sobic002G155900--Sobic003G214000 Sobic006G152500 Sobic006G152500 Sobic002G155900--Sobic006G152500 Sobic010G079700 Sobic010G079700 Sobic002G155900--Sobic010G079700 Sobic009G085900 Sobic009G085900 Sobic002G155900--Sobic009G085900 Sobic001G410450 Sobic001G410450 Sobic002G155900--Sobic001G410450 Sobic004G217700 Sobic004G217700 Sobic002G155900--Sobic004G217700 Sobic002G155900--Sobic002G287000 Sobic008G148400 Sobic008G148400 Sobic009G238100--Sobic008G148400 Sobic001G426400 Sobic001G426400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G036300 Sobic009G036300 Sobic009G238100--Sobic009G036300 Sobic003G030400 Sobic003G030400 Sobic009G238100--Sobic003G030400 Sobic007G227600 Sobic007G227600 Sobic009G238100--Sobic007G227600 Sobic002G038300 Sobic002G038300 Sobic009G238100--Sobic002G038300 Sobic010G228700 Sobic010G228700 Sobic002G040800--Sobic010G228700 Sobic009G094800 Sobic009G094800 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G174900 Sobic002G174900 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic004G135300 Sobic004G135300 Sobic002G040800--Sobic004G135300 Sobic006G042200 Sobic006G042200 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000 Sobic004G068700 Sobic004G068700 Sobic002G287000--Sobic004G068700 Sobic002G287000--Sobic001G179100 Sobic002G287000--Sobic003G255100 Sobic002G287000--Sobic002G366100 Sobic001G321600 Sobic001G321600 Sobic002G287000--Sobic001G321600 Sobic002G287000--Sobic003G214000 Sobic002G287000--Sobic001G005500 Sobic002G287000--Sobic009G238100 Sobic002G287000--Sobic002G195700
Octagon: transcription factors


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