Gene annotation
Transcriptome id Sobic.001G008000.2
Synonym EMB1025
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6QGU2
Pfam PF12854 PF13041
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20090 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g30420.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009087 , Zm00025a003429 , Zm00025a016313
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
2 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms
3 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
4 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
5 Sobic.006G273900 expressed protein -
6 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial
7 Sobic.007G145100 SGT1 protein, putative, expressed -
8 Sobic.004G027300 expressed protein -
9 Sobic.004G305100 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.001G049800 DDT domain containing protein, putative, expressed -
11 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
12 Sobic.010G097500 DNA polymerase lambda, putative, expressed K03512: DNA polymerase lambda
13 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
14 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
15 Sobic.002G052400 PPR repeat containing protein, expressed -
16 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
17 Sobic.002G263700 bromodomain protein 103, putative, expressed -
18 Sobic.006G206200 - -
19 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
20 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41


Gene co-expression network
sample Sobic001G008000 Sobic001G008000 Sobic001G502600 Sobic001G502600 Sobic001G008000--Sobic001G502600 Sobic010G041000 Sobic010G041000 Sobic001G008000--Sobic010G041000 Sobic007G059700 Sobic007G059700 Sobic001G008000--Sobic007G059700 Sobic008G022701 Sobic008G022701 Sobic001G008000--Sobic008G022701 Sobic006G273900 Sobic006G273900 Sobic001G008000--Sobic006G273900 Sobic010G153300 Sobic010G153300 Sobic001G008000--Sobic010G153300 Sobic007G145100 Sobic007G145100 Sobic001G008000--Sobic007G145100 Sobic004G027300 Sobic004G027300 Sobic001G008000--Sobic004G027300 Sobic004G305100 Sobic004G305100 Sobic001G008000--Sobic004G305100 Sobic001G502600--Sobic001G008000 Sobic001G502600--Sobic004G305100 Sobic001G502600--Sobic010G041000 Sobic001G502600--Sobic006G273900 Sobic005G100900 Sobic005G100900 Sobic001G502600--Sobic005G100900 Sobic003G209400 Sobic003G209400 Sobic001G502600--Sobic003G209400 Sobic002G155000 Sobic002G155000 Sobic001G502600--Sobic002G155000 Sobic003G332900 Sobic003G332900 Sobic001G502600--Sobic003G332900 Sobic001G190400 Sobic001G190400 Sobic001G502600--Sobic001G190400 Sobic010G041000--Sobic004G305100 Sobic004G111000 Sobic004G111000 Sobic010G041000--Sobic004G111000 Sobic003G098900 Sobic003G098900 Sobic010G041000--Sobic003G098900 Sobic010G041000--Sobic001G008000 Sobic003G361400 Sobic003G361400 Sobic010G041000--Sobic003G361400 Sobic010G041000--Sobic001G502600 Sobic002G110500 Sobic002G110500 Sobic010G041000--Sobic002G110500 Sobic004G038100 Sobic004G038100 Sobic010G041000--Sobic004G038100 Sobic010G041000--Sobic007G059700 Sobic007G059700--Sobic006G273900 Sobic007G060600 Sobic007G060600 Sobic007G059700--Sobic007G060600 Sobic004G151000 Sobic004G151000 Sobic007G059700--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic007G059700--Sobic001G049800 Sobic007G059700--Sobic004G027300 Sobic009G191500 Sobic009G191500 Sobic007G059700--Sobic009G191500 Sobic001G453500 Sobic001G453500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic006G111200 Sobic006G111200 Sobic007G059700--Sobic006G111200 Sobic008G022701--Sobic003G332900 Sobic008G022701--Sobic001G008000 Sobic001G119600 Sobic001G119600 Sobic008G022701--Sobic001G119600 Sobic002G052400 Sobic002G052400 Sobic008G022701--Sobic002G052400 Sobic008G022701--Sobic007G145100 Sobic008G022701--Sobic005G100900 Sobic001G157300 Sobic001G157300 Sobic008G022701--Sobic001G157300 Sobic008G022701--Sobic001G502600 Sobic008G022701--Sobic004G027300 Sobic006G273900--Sobic007G059700 Sobic006G273900--Sobic007G060600 Sobic006G273900--Sobic001G049800 Sobic006G273900--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G273900--Sobic001G368300 Sobic006G273900--Sobic004G027300 Sobic006G273900--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic006G273900--Sobic004G215900 Sobic006G273900--Sobic006G111200 Sobic010G153300--Sobic009G191500 Sobic010G153300--Sobic004G215900 Sobic010G153300--Sobic010G097500 Sobic010G038800 Sobic010G038800 Sobic010G153300--Sobic010G038800 Sobic002G043000 Sobic002G043000 Sobic010G153300--Sobic002G043000 Sobic010G153300--Sobic007G059700 Sobic008G068100 Sobic008G068100 Sobic010G153300--Sobic008G068100 Sobic005G098000 Sobic005G098000 Sobic010G153300--Sobic005G098000 Sobic006G206200 Sobic006G206200 Sobic010G153300--Sobic006G206200 Sobic002G377800 Sobic002G377800 Sobic007G145100--Sobic002G377800 Sobic001G544500 Sobic001G544500 Sobic007G145100--Sobic001G544500 Sobic010G228700 Sobic010G228700 Sobic007G145100--Sobic010G228700 Sobic002G399200 Sobic002G399200 Sobic007G145100--Sobic002G399200 Sobic007G145100--Sobic002G052400 Sobic007G145100--Sobic005G100900 Sobic001G362300 Sobic001G362300 Sobic007G145100--Sobic001G362300 Sobic007G145100--Sobic001G119600 Sobic007G145100--Sobic008G022701 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic010G224700 Sobic010G224700 Sobic004G027300--Sobic010G224700 Sobic004G027300--Sobic007G060600 Sobic002G378100 Sobic002G378100 Sobic004G027300--Sobic002G378100 Sobic003G425100 Sobic003G425100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic002G112600 Sobic002G112600 Sobic004G027300--Sobic002G112600 Sobic004G305100--Sobic003G098900 Sobic004G305100--Sobic010G041000 Sobic004G305100--Sobic001G502600 Sobic006G125900 Sobic006G125900 Sobic004G305100--Sobic006G125900 Sobic006G231400 Sobic006G231400 Sobic004G305100--Sobic006G231400 Sobic002G318800 Sobic002G318800 Sobic004G305100--Sobic002G318800 Sobic010G215900 Sobic010G215900 Sobic004G305100--Sobic010G215900 Sobic009G163600 Sobic009G163600 Sobic004G305100--Sobic009G163600 Sobic006G140400 Sobic006G140400 Sobic004G305100--Sobic006G140400
Octagon: transcription factors


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