Gene annotation
Transcriptome id Sobic.004G305100.1
Synonym Sb04g033830
Functional annotation mTERF family protein, expressed
UniProt C5XSR4
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF39
NCBI CDD KOG1267; Mitochondrial transcription termination factor, mTERF
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT5G07900 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os02g51460.1 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a022173
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G305100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G098900 - -
2 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms
3 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
4 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
5 Sobic.006G231400 pentatricopeptide repeat domain containing protein, putative, expressed -
6 Sobic.002G318800 - K14776: DDX10, ATP-dependent RNA helicase DDX10/DBP4
7 Sobic.010G215900 type II intron maturase protein, putative, expressed -
8 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
9 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
10 Sobic.010G031500 - -
11 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
12 Sobic.004G111000 bromodomain containing protein, expressed -
13 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
14 Sobic.010G224700 - K17680: twinkle protein
15 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
16 Sobic.001G008000 PPR repeat domain containing protein, putative, expressed -
17 Sobic.004G342300 expressed protein -
18 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
19 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27


Gene co-expression network
sample Sobic004G305100 Sobic004G305100 Sobic003G098900 Sobic003G098900 Sobic004G305100--Sobic003G098900 Sobic010G041000 Sobic010G041000 Sobic004G305100--Sobic010G041000 Sobic001G502600 Sobic001G502600 Sobic004G305100--Sobic001G502600 Sobic006G125900 Sobic006G125900 Sobic004G305100--Sobic006G125900 Sobic006G231400 Sobic006G231400 Sobic004G305100--Sobic006G231400 Sobic002G318800 Sobic002G318800 Sobic004G305100--Sobic002G318800 Sobic010G215900 Sobic010G215900 Sobic004G305100--Sobic010G215900 Sobic009G163600 Sobic009G163600 Sobic004G305100--Sobic009G163600 Sobic006G140400 Sobic006G140400 Sobic004G305100--Sobic006G140400 Sobic003G098900--Sobic004G305100 Sobic003G098900--Sobic010G041000 Sobic004G111000 Sobic004G111000 Sobic003G098900--Sobic004G111000 Sobic002G394800 Sobic002G394800 Sobic003G098900--Sobic002G394800 Sobic004G285000 Sobic004G285000 Sobic003G098900--Sobic004G285000 Sobic003G098900--Sobic010G215900 Sobic003G361400 Sobic003G361400 Sobic003G098900--Sobic003G361400 Sobic003G436600 Sobic003G436600 Sobic003G098900--Sobic003G436600 Sobic002G177500 Sobic002G177500 Sobic003G098900--Sobic002G177500 Sobic010G041000--Sobic004G305100 Sobic010G041000--Sobic004G111000 Sobic010G041000--Sobic003G098900 Sobic001G008000 Sobic001G008000 Sobic010G041000--Sobic001G008000 Sobic010G041000--Sobic003G361400 Sobic010G041000--Sobic001G502600 Sobic002G110500 Sobic002G110500 Sobic010G041000--Sobic002G110500 Sobic004G038100 Sobic004G038100 Sobic010G041000--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic010G041000--Sobic007G059700 Sobic001G502600--Sobic001G008000 Sobic001G502600--Sobic004G305100 Sobic001G502600--Sobic010G041000 Sobic006G273900 Sobic006G273900 Sobic001G502600--Sobic006G273900 Sobic005G100900 Sobic005G100900 Sobic001G502600--Sobic005G100900 Sobic003G209400 Sobic003G209400 Sobic001G502600--Sobic003G209400 Sobic002G155000 Sobic002G155000 Sobic001G502600--Sobic002G155000 Sobic003G332900 Sobic003G332900 Sobic001G502600--Sobic003G332900 Sobic001G190400 Sobic001G190400 Sobic001G502600--Sobic001G190400 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic001G322600 Sobic001G322600 Sobic006G231400--Sobic001G322600 Sobic006G231400--Sobic004G305100 Sobic010G278600 Sobic010G278600 Sobic006G231400--Sobic010G278600 Sobic004G007900 Sobic004G007900 Sobic006G231400--Sobic004G007900 Sobic006G185200 Sobic006G185200 Sobic006G231400--Sobic006G185200 Sobic006G231400--Sobic004G111000 Sobic006G059500 Sobic006G059500 Sobic006G231400--Sobic006G059500 Sobic004G151000 Sobic004G151000 Sobic006G231400--Sobic004G151000 Sobic006G111200 Sobic006G111200 Sobic006G231400--Sobic006G111200 Sobic001G239800 Sobic001G239800 Sobic002G318800--Sobic001G239800 Sobic001G450000 Sobic001G450000 Sobic002G318800--Sobic001G450000 Sobic007G097400 Sobic007G097400 Sobic002G318800--Sobic007G097400 Sobic007G075800 Sobic007G075800 Sobic002G318800--Sobic007G075800 Sobic002G318800--Sobic003G209400 Sobic002G318800--Sobic006G125900 Sobic002G318800--Sobic008G051200 Sobic007G201700 Sobic007G201700 Sobic002G318800--Sobic007G201700 Sobic002G112600 Sobic002G112600 Sobic002G318800--Sobic002G112600 Sobic003G409200 Sobic003G409200 Sobic010G215900--Sobic003G409200 Sobic010G215900--Sobic004G285000 Sobic010G215900--Sobic004G111000 Sobic001G346900 Sobic001G346900 Sobic010G215900--Sobic001G346900 Sobic001G013300 Sobic001G013300 Sobic010G215900--Sobic001G013300 Sobic006G226300 Sobic006G226300 Sobic010G215900--Sobic006G226300 Sobic008G147200 Sobic008G147200 Sobic010G215900--Sobic008G147200 Sobic003G042400 Sobic003G042400 Sobic010G215900--Sobic003G042400 Sobic004G155600 Sobic004G155600 Sobic010G215900--Sobic004G155600 Sobic003G425100 Sobic003G425100 Sobic009G163600--Sobic003G425100 Sobic009G163600--Sobic003G436600 Sobic009G163600--Sobic002G112600 Sobic010G224700 Sobic010G224700 Sobic009G163600--Sobic010G224700 Sobic009G163600--Sobic001G322600 Sobic008G163500 Sobic008G163500 Sobic009G163600--Sobic008G163500 Sobic009G163600--Sobic004G038100 Sobic009G163600--Sobic007G059700 Sobic009G163600--Sobic006G140400 Sobic001G453500 Sobic001G453500 Sobic006G140400--Sobic001G453500 Sobic006G140400--Sobic010G224700 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic010G032300 Sobic010G032300 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000
Octagon: transcription factors


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