Gene annotation
Transcriptome id Sobic.002G318800.1
Synonym Sb02g034740
Functional annotation -
UniProt C5XA14
Pfam PF13959 PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF54
NCBI CDD -
KEGG Orthology K14776; DDX10, ATP-dependent RNA helicase DDX10/DBP4
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G54910 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os07g33340.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a014796
Brachypodium -
Barley -
Wheat TraesCS2B02G247500 , TraesCS2B02G247500 , TraesCS2D02G228000 , TraesCS2A02G222000
Populus -


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cDNA sequences
Sobic.002G318800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
2 Sobic.001G450000 nucleoporin, putative, expressed K14300: nuclear pore complex protein Nup133
3 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
4 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
5 Sobic.003G209400 expressed protein -
6 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
7 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
8 Sobic.007G201700 mTERF domain containing protein, expressed -
9 Sobic.002G112600 zinc finger family protein, putative, expressed -
10 Sobic.001G393900 FAD binding domain containing protein, expressed -
11 Sobic.007G217100 sas10/Utp3 family protein, expressed K14767: UTP3, U3 small nucleolar RNA-associated protein 3
12 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
13 Sobic.004G092600 NOL1/NOP2/sun family protein, putative, expressed K15264: NSUN5, WBSCR20, 25S rRNA (cytosine2278-C5)-methyltransferase
14 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
15 Sobic.006G112700 ATPOT1, putative, expressed -
16 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
17 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
18 Sobic.009G211200 tRNAHis guanylyltransferase family protein, expressed K10761: tRNA(His) guanylyltransferase
19 Sobic.002G155000 EMB1381, putative, expressed -
20 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G318800 Sobic002G318800 Sobic001G239800 Sobic001G239800 Sobic002G318800--Sobic001G239800 Sobic001G450000 Sobic001G450000 Sobic002G318800--Sobic001G450000 Sobic007G097400 Sobic007G097400 Sobic002G318800--Sobic007G097400 Sobic007G075800 Sobic007G075800 Sobic002G318800--Sobic007G075800 Sobic003G209400 Sobic003G209400 Sobic002G318800--Sobic003G209400 Sobic006G125900 Sobic006G125900 Sobic002G318800--Sobic006G125900 Sobic008G051200 Sobic008G051200 Sobic002G318800--Sobic008G051200 Sobic007G201700 Sobic007G201700 Sobic002G318800--Sobic007G201700 Sobic002G112600 Sobic002G112600 Sobic002G318800--Sobic002G112600 Sobic006G112700 Sobic006G112700 Sobic001G239800--Sobic006G112700 Sobic003G123100 Sobic003G123100 Sobic001G239800--Sobic003G123100 Sobic001G239800--Sobic002G318800 Sobic003G330900 Sobic003G330900 Sobic001G239800--Sobic003G330900 Sobic001G536000 Sobic001G536000 Sobic001G239800--Sobic001G536000 Sobic002G252100 Sobic002G252100 Sobic001G239800--Sobic002G252100 Sobic007G014800 Sobic007G014800 Sobic001G239800--Sobic007G014800 Sobic001G239800--Sobic006G125900 Sobic004G315500 Sobic004G315500 Sobic001G239800--Sobic004G315500 Sobic003G375200 Sobic003G375200 Sobic001G450000--Sobic003G375200 Sobic001G450000--Sobic002G318800 Sobic001G450000--Sobic007G097400 Sobic001G020000 Sobic001G020000 Sobic001G450000--Sobic001G020000 Sobic002G412700 Sobic002G412700 Sobic001G450000--Sobic002G412700 Sobic006G029100 Sobic006G029100 Sobic001G450000--Sobic006G029100 Sobic010G080700 Sobic010G080700 Sobic001G450000--Sobic010G080700 Sobic001G451300 Sobic001G451300 Sobic001G450000--Sobic001G451300 Sobic006G047900 Sobic006G047900 Sobic001G450000--Sobic006G047900 Sobic009G213200 Sobic009G213200 Sobic007G097400--Sobic009G213200 Sobic001G276200 Sobic001G276200 Sobic007G097400--Sobic001G276200 Sobic010G100800 Sobic010G100800 Sobic007G097400--Sobic010G100800 Sobic004G171200 Sobic004G171200 Sobic007G097400--Sobic004G171200 Sobic007G097400--Sobic001G450000 Sobic007G097400--Sobic003G209400 Sobic006G128400 Sobic006G128400 Sobic007G097400--Sobic006G128400 Sobic007G097400--Sobic006G125900 Sobic006G137600 Sobic006G137600 Sobic007G097400--Sobic006G137600 Sobic002G031700 Sobic002G031700 Sobic007G075800--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic007G075800--Sobic002G155000 Sobic004G025800 Sobic004G025800 Sobic007G075800--Sobic004G025800 Sobic004G030800 Sobic004G030800 Sobic007G075800--Sobic004G030800 Sobic008G165900 Sobic008G165900 Sobic007G075800--Sobic008G165900 Sobic007G075800--Sobic006G128400 Sobic007G075800--Sobic008G051200 Sobic006G049900 Sobic006G049900 Sobic007G075800--Sobic006G049900 Sobic007G075800--Sobic002G318800 Sobic009G007700 Sobic009G007700 Sobic003G209400--Sobic009G007700 Sobic003G209400--Sobic002G412700 Sobic003G209400--Sobic006G112700 Sobic010G085200 Sobic010G085200 Sobic003G209400--Sobic010G085200 Sobic008G080500 Sobic008G080500 Sobic003G209400--Sobic008G080500 Sobic003G209400--Sobic007G097400 Sobic004G034700 Sobic004G034700 Sobic003G209400--Sobic004G034700 Sobic008G017100 Sobic008G017100 Sobic003G209400--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic003G209400--Sobic002G356600 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic008G051200--Sobic004G171200 Sobic001G251100 Sobic001G251100 Sobic008G051200--Sobic001G251100 Sobic008G051200--Sobic006G125900 Sobic004G185800 Sobic004G185800 Sobic008G051200--Sobic004G185800 Sobic001G493200 Sobic001G493200 Sobic008G051200--Sobic001G493200 Sobic001G089600 Sobic001G089600 Sobic008G051200--Sobic001G089600 Sobic008G051200--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic008G051200--Sobic001G393900 Sobic008G051200--Sobic004G030800 Sobic007G201700--Sobic002G112600 Sobic002G423400 Sobic002G423400 Sobic007G201700--Sobic002G423400 Sobic001G119600 Sobic001G119600 Sobic007G201700--Sobic001G119600 Sobic009G246500 Sobic009G246500 Sobic007G201700--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic007G201700--Sobic010G224700 Sobic008G049100 Sobic008G049100 Sobic007G201700--Sobic008G049100 Sobic007G201700--Sobic006G128400 Sobic008G163500 Sobic008G163500 Sobic007G201700--Sobic008G163500 Sobic005G098800 Sobic005G098800 Sobic007G201700--Sobic005G098800 Sobic004G151000 Sobic004G151000 Sobic002G112600--Sobic004G151000 Sobic004G215900 Sobic004G215900 Sobic002G112600--Sobic004G215900 Sobic002G112600--Sobic010G224700 Sobic002G112600--Sobic007G014800 Sobic005G000300 Sobic005G000300 Sobic002G112600--Sobic005G000300 Sobic004G027400 Sobic004G027400 Sobic002G112600--Sobic004G027400 Sobic009G163600 Sobic009G163600 Sobic002G112600--Sobic009G163600 Sobic001G453500 Sobic001G453500 Sobic002G112600--Sobic001G453500 Sobic004G027300 Sobic004G027300 Sobic002G112600--Sobic004G027300
Octagon: transcription factors


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