Gene annotation
Transcriptome id Sobic.004G092600.3,Sobic.004G092600.1
Synonym Sb04g007580
Functional annotation NOL1/NOP2/sun family protein, putative, expressed
UniProt A0A1Z5RLT5 , A0A194YNJ9
Pfam PF01209 PF01189
Panther DB PTHR22807 PTHR22807:SF4 PTHR22807:SF4 PTHR22807
NCBI CDD KOG2360; Proliferation-associated nucleolar protein (NOL1)
KEGG Orthology K15264; NSUN5, WBSCR20, 25S rRNA (cytosine2278-C5)-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT5G26180 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os02g12600.1 : NOL1/NOP2/sun family protein, putative, expressed
MaizeGDB (Corn) Zm00025a014886 , Zm00025a020200 , Zm00025a014888
Brachypodium KQJ94032 , KQJ94033
Barley HORVU6Hr1G038870.6 , HORVU6Hr1G038870.7 , HORVU6Hr1G038870.4 , HORVU6Hr1G038870.5 , HORVU6Hr1G038870.2 , HORVU6Hr1G038870.3 , HORVU6Hr1G038870.1 , HORVU6Hr1G038870.8 , HORVU6Hr1G038870.9 , HORVU6Hr1G038870.18 , HORVU6Hr1G038870.19 , HORVU6Hr1G038870.14 , HORVU6Hr1G038870.15 , HORVU6Hr1G038870.17 , HORVU6Hr1G038870.10 , HORVU6Hr1G038870.11 , HORVU6Hr1G038870.13 , HORVU6Hr1G038870.21 , HORVU6Hr1G038870.20
Wheat TraesCS6A02G183400 , TraesCS6A02G183400 , TraesCS6B02G213900 , TraesCS6B02G213900 , TraesCS6D02G171500 , TraesCS6D02G171500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
2 Sobic.002G318800 - K14776: DDX10, ATP-dependent RNA helicase DDX10/DBP4
3 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
4 Sobic.001G393900 FAD binding domain containing protein, expressed -
5 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
6 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
7 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
8 Sobic.006G169500 L-asparaginase precursor protein, putative, expressed K01444: AGA, N4-(beta-N-acetylglucosaminyl)-L-asparaginase
9 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
10 Sobic.010G089800 expressed protein -
11 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
12 Sobic.003G217200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
13 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
14 Sobic.006G245900 FAR1 family protein, expressed -
15 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
16 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
17 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
18 Sobic.002G112600 zinc finger family protein, putative, expressed -
19 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
20 Sobic.004G155600 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic004G092600 Sobic004G092600 Sobic002G371600 Sobic002G371600 Sobic004G092600--Sobic002G371600 Sobic002G318800 Sobic002G318800 Sobic004G092600--Sobic002G318800 Sobic001G239800 Sobic001G239800 Sobic004G092600--Sobic001G239800 Sobic001G393900 Sobic001G393900 Sobic004G092600--Sobic001G393900 Sobic001G248100 Sobic001G248100 Sobic004G092600--Sobic001G248100 Sobic001G461300 Sobic001G461300 Sobic004G092600--Sobic001G461300 Sobic003G062300 Sobic003G062300 Sobic004G092600--Sobic003G062300 Sobic006G169500 Sobic006G169500 Sobic004G092600--Sobic006G169500 Sobic006G269800 Sobic006G269800 Sobic004G092600--Sobic006G269800 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic002G318800--Sobic001G239800 Sobic001G450000 Sobic001G450000 Sobic002G318800--Sobic001G450000 Sobic007G097400 Sobic007G097400 Sobic002G318800--Sobic007G097400 Sobic007G075800 Sobic007G075800 Sobic002G318800--Sobic007G075800 Sobic003G209400 Sobic003G209400 Sobic002G318800--Sobic003G209400 Sobic006G125900 Sobic006G125900 Sobic002G318800--Sobic006G125900 Sobic008G051200 Sobic008G051200 Sobic002G318800--Sobic008G051200 Sobic007G201700 Sobic007G201700 Sobic002G318800--Sobic007G201700 Sobic002G112600 Sobic002G112600 Sobic002G318800--Sobic002G112600 Sobic006G112700 Sobic006G112700 Sobic001G239800--Sobic006G112700 Sobic003G123100 Sobic003G123100 Sobic001G239800--Sobic003G123100 Sobic001G239800--Sobic002G318800 Sobic003G330900 Sobic003G330900 Sobic001G239800--Sobic003G330900 Sobic001G536000 Sobic001G536000 Sobic001G239800--Sobic001G536000 Sobic002G252100 Sobic002G252100 Sobic001G239800--Sobic002G252100 Sobic007G014800 Sobic007G014800 Sobic001G239800--Sobic007G014800 Sobic001G239800--Sobic006G125900 Sobic004G315500 Sobic004G315500 Sobic001G239800--Sobic004G315500 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic002G412700 Sobic002G412700 Sobic001G248100--Sobic002G412700 Sobic010G000800 Sobic010G000800 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G248100--Sobic005G115500 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic003G405500 Sobic003G405500 Sobic001G248100--Sobic003G405500 Sobic002G372500 Sobic002G372500 Sobic001G461300--Sobic002G372500 Sobic006G193300 Sobic006G193300 Sobic001G461300--Sobic006G193300 Sobic001G408600 Sobic001G408600 Sobic001G461300--Sobic001G408600 Sobic006G002800 Sobic006G002800 Sobic001G461300--Sobic006G002800 Sobic009G234700 Sobic009G234700 Sobic001G461300--Sobic009G234700 Sobic001G461300--Sobic002G371600 Sobic007G089800 Sobic007G089800 Sobic001G461300--Sobic007G089800 Sobic001G373000 Sobic001G373000 Sobic001G461300--Sobic001G373000 Sobic004G224600 Sobic004G224600 Sobic001G461300--Sobic004G224600 Sobic006G224800 Sobic006G224800 Sobic003G062300--Sobic006G224800 Sobic004G309900 Sobic004G309900 Sobic003G062300--Sobic004G309900 Sobic002G145800 Sobic002G145800 Sobic003G062300--Sobic002G145800 Sobic003G416700 Sobic003G416700 Sobic003G062300--Sobic003G416700 Sobic005G220000 Sobic005G220000 Sobic003G062300--Sobic005G220000 Sobic001G051700 Sobic001G051700 Sobic003G062300--Sobic001G051700 Sobic002G164200 Sobic002G164200 Sobic003G062300--Sobic002G164200 Sobic003G214600 Sobic003G214600 Sobic003G062300--Sobic003G214600 Sobic007G183300 Sobic007G183300 Sobic003G062300--Sobic007G183300 Sobic007G000300 Sobic007G000300 Sobic006G169500--Sobic007G000300 Sobic006G169500--Sobic001G393900 Sobic008G140700 Sobic008G140700 Sobic006G169500--Sobic008G140700 Sobic006G169500--Sobic001G248100 Sobic010G089800 Sobic010G089800 Sobic006G169500--Sobic010G089800 Sobic008G054600 Sobic008G054600 Sobic006G169500--Sobic008G054600 Sobic001G250700 Sobic001G250700 Sobic006G169500--Sobic001G250700 Sobic001G453000 Sobic001G453000 Sobic006G169500--Sobic001G453000 Sobic006G073200 Sobic006G073200 Sobic006G169500--Sobic006G073200 Sobic006G269800--Sobic002G145800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500
Octagon: transcription factors


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