Gene annotation
Transcriptome id Sobic.010G031500.2,Sobic.010G031500.1
Synonym
Functional annotation -
UniProt A0A194YH24 , A0A1W0VR98
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G031500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G171300 - -
2 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
3 Sobic.008G088875 - -
4 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
5 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
6 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
7 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
8 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
9 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
10 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
11 Sobic.010G232900 surp module family protein, putative, expressed -
12 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
13 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
14 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
15 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
16 Sobic.004G305100 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.004G357400 beta-catenin-like protein 1, putative, expressed K12864: beta-catenin-like protein 1
18 Sobic.004G136500 - -
19 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
20 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1


Gene co-expression network
sample Sobic010G031500 Sobic010G031500 Sobic002G171300 Sobic002G171300 Sobic010G031500--Sobic002G171300 Sobic006G125900 Sobic006G125900 Sobic010G031500--Sobic006G125900 Sobic008G088875 Sobic008G088875 Sobic010G031500--Sobic008G088875 Sobic006G233000 Sobic006G233000 Sobic010G031500--Sobic006G233000 Sobic001G003500 Sobic001G003500 Sobic010G031500--Sobic001G003500 Sobic010G085200 Sobic010G085200 Sobic010G031500--Sobic010G085200 Sobic009G045900 Sobic009G045900 Sobic010G031500--Sobic009G045900 Sobic001G461300 Sobic001G461300 Sobic010G031500--Sobic001G461300 Sobic010G007100 Sobic010G007100 Sobic010G031500--Sobic010G007100 Sobic005G108000 Sobic005G108000 Sobic002G171300--Sobic005G108000 Sobic003G146600 Sobic003G146600 Sobic002G171300--Sobic003G146600 Sobic004G224600 Sobic004G224600 Sobic002G171300--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic002G171300--Sobic006G002800 Sobic009G211200 Sobic009G211200 Sobic002G171300--Sobic009G211200 Sobic005G026400 Sobic005G026400 Sobic002G171300--Sobic005G026400 Sobic001G431400 Sobic001G431400 Sobic002G171300--Sobic001G431400 Sobic002G235200 Sobic002G235200 Sobic002G171300--Sobic002G235200 Sobic010G102600 Sobic010G102600 Sobic002G171300--Sobic010G102600 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic003G188400 Sobic003G188400 Sobic008G088875--Sobic003G188400 Sobic008G088875--Sobic004G340400 Sobic002G145800 Sobic002G145800 Sobic008G088875--Sobic002G145800 Sobic001G461400 Sobic001G461400 Sobic008G088875--Sobic001G461400 Sobic003G217200 Sobic003G217200 Sobic008G088875--Sobic003G217200 Sobic008G063300 Sobic008G063300 Sobic008G088875--Sobic008G063300 Sobic002G371700 Sobic002G371700 Sobic008G088875--Sobic002G371700 Sobic008G088875--Sobic010G007100 Sobic010G237900 Sobic010G237900 Sobic008G088875--Sobic010G237900 Sobic006G010000 Sobic006G010000 Sobic006G233000--Sobic006G010000 Sobic006G233000--Sobic010G085200 Sobic006G233300 Sobic006G233300 Sobic006G233000--Sobic006G233300 Sobic004G155600 Sobic004G155600 Sobic006G233000--Sobic004G155600 Sobic001G259000 Sobic001G259000 Sobic006G233000--Sobic001G259000 Sobic002G394800 Sobic002G394800 Sobic006G233000--Sobic002G394800 Sobic003G439800 Sobic003G439800 Sobic006G233000--Sobic003G439800 Sobic006G270600 Sobic006G270600 Sobic006G233000--Sobic006G270600 Sobic007G134100 Sobic007G134100 Sobic006G233000--Sobic007G134100 Sobic004G321700 Sobic004G321700 Sobic001G003500--Sobic004G321700 Sobic008G147200 Sobic008G147200 Sobic001G003500--Sobic008G147200 Sobic002G052700 Sobic002G052700 Sobic001G003500--Sobic002G052700 Sobic001G291800 Sobic001G291800 Sobic001G003500--Sobic001G291800 Sobic005G220000 Sobic005G220000 Sobic001G003500--Sobic005G220000 Sobic001G003500--Sobic010G007100 Sobic004G357400 Sobic004G357400 Sobic001G003500--Sobic004G357400 Sobic004G095300 Sobic004G095300 Sobic001G003500--Sobic004G095300 Sobic001G003500--Sobic006G125900 Sobic010G085200--Sobic005G220000 Sobic002G412700 Sobic002G412700 Sobic010G085200--Sobic002G412700 Sobic010G085200--Sobic006G233000 Sobic009G007700 Sobic009G007700 Sobic010G085200--Sobic009G007700 Sobic010G279700 Sobic010G279700 Sobic010G085200--Sobic010G279700 Sobic010G239800 Sobic010G239800 Sobic010G085200--Sobic010G239800 Sobic007G011600 Sobic007G011600 Sobic010G085200--Sobic007G011600 Sobic003G314700 Sobic003G314700 Sobic010G085200--Sobic003G314700 Sobic003G209400 Sobic003G209400 Sobic010G085200--Sobic003G209400 Sobic008G135200 Sobic008G135200 Sobic009G045900--Sobic008G135200 Sobic002G047000 Sobic002G047000 Sobic009G045900--Sobic002G047000 Sobic002G246700 Sobic002G246700 Sobic009G045900--Sobic002G246700 Sobic002G408900 Sobic002G408900 Sobic009G045900--Sobic002G408900 Sobic001G090100 Sobic001G090100 Sobic009G045900--Sobic001G090100 Sobic009G045900--Sobic003G314700 Sobic010G206300 Sobic010G206300 Sobic009G045900--Sobic010G206300 Sobic001G248100 Sobic001G248100 Sobic009G045900--Sobic001G248100 Sobic001G537500 Sobic001G537500 Sobic009G045900--Sobic001G537500 Sobic002G372500 Sobic002G372500 Sobic001G461300--Sobic002G372500 Sobic006G193300 Sobic006G193300 Sobic001G461300--Sobic006G193300 Sobic001G408600 Sobic001G408600 Sobic001G461300--Sobic001G408600 Sobic001G461300--Sobic006G002800 Sobic009G234700 Sobic009G234700 Sobic001G461300--Sobic009G234700 Sobic002G371600 Sobic002G371600 Sobic001G461300--Sobic002G371600 Sobic007G089800 Sobic007G089800 Sobic001G461300--Sobic007G089800 Sobic001G373000 Sobic001G373000 Sobic001G461300--Sobic001G373000 Sobic001G461300--Sobic004G224600 Sobic010G007100--Sobic001G145400 Sobic010G007100--Sobic008G147200 Sobic010G007100--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic010G007100--Sobic006G086600 Sobic005G137700 Sobic005G137700 Sobic010G007100--Sobic005G137700 Sobic006G077200 Sobic006G077200 Sobic010G007100--Sobic006G077200 Sobic010G007100--Sobic002G235200 Sobic010G007100--Sobic006G002800 Sobic003G042400 Sobic003G042400 Sobic010G007100--Sobic003G042400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.