Gene annotation
Transcriptome id Sobic.010G232900.1
Synonym Sb10g027510
Functional annotation surp module family protein, putative, expressed
UniProt C5Z868
Pfam PF01805 PF04818
Panther DB PTHR12323
NCBI CDD KOG0007; Splicing factor 3a, subunit 1
KEGG Orthology -
Gene Ontology GO:0006396; RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT4G31200 : SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein
RAP-DB (Rice) LOC_Os06g46880.1 : surp module family protein, putative, expressed
MaizeGDB (Corn) Zm00025a041869
Brachypodium KQK17195
Barley HORVU7Hr1G102060.1
Wheat TraesCS7B02G352200 , TraesCS7D02G441400
Populus -


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cDNA sequences
Sobic.010G232900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
2 Sobic.007G027700 expressed protein -
3 Sobic.008G127400 OsFBX252 - F-box domain containing protein, expressed -
4 Sobic.010G239800 hydrolase, NUDIX family, domain containing protein, expressed K12613: mRNA-decapping enzyme subunit 2
5 Sobic.002G280600 hydroxyproline-rich glycoprotein family protein, putative, expressed -
6 Sobic.003G187200 phox domain-containing protein, putative, expressed -
7 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
8 Sobic.006G204800 APO, putative, expressed -
9 Sobic.001G526300 WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
10 Sobic.002G143900 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
11 Sobic.006G281700 DUF803 domain containing, putative, expressed -
12 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
13 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
14 Sobic.009G001100 expressed protein -
15 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
16 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
17 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
18 Sobic.008G147200 tubulin, putative, expressed -
19 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
20 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1


Gene co-expression network
sample Sobic010G232900 Sobic010G232900 Sobic001G042200 Sobic001G042200 Sobic010G232900--Sobic001G042200 Sobic007G027700 Sobic007G027700 Sobic010G232900--Sobic007G027700 Sobic008G127400 Sobic008G127400 Sobic010G232900--Sobic008G127400 Sobic010G239800 Sobic010G239800 Sobic010G232900--Sobic010G239800 Sobic002G280600 Sobic002G280600 Sobic010G232900--Sobic002G280600 Sobic003G187200 Sobic003G187200 Sobic010G232900--Sobic003G187200 Sobic003G006400 Sobic003G006400 Sobic010G232900--Sobic003G006400 Sobic006G204800 Sobic006G204800 Sobic010G232900--Sobic006G204800 Sobic001G526300 Sobic001G526300 Sobic010G232900--Sobic001G526300 Sobic010G077500 Sobic010G077500 Sobic001G042200--Sobic010G077500 Sobic004G345400 Sobic004G345400 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic007G042900 Sobic007G042900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic007G027700--Sobic008G127400 Sobic003G401100 Sobic003G401100 Sobic007G027700--Sobic003G401100 Sobic003G412300 Sobic003G412300 Sobic007G027700--Sobic003G412300 Sobic001G143500 Sobic001G143500 Sobic007G027700--Sobic001G143500 Sobic004G325400 Sobic004G325400 Sobic007G027700--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic007G027700--Sobic005G216300 Sobic001G395100 Sobic001G395100 Sobic007G027700--Sobic001G395100 Sobic010G279900 Sobic010G279900 Sobic007G027700--Sobic010G279900 Sobic006G267300 Sobic006G267300 Sobic007G027700--Sobic006G267300 Sobic008G127400--Sobic007G027700 Sobic008G127400--Sobic006G267300 Sobic003G205501 Sobic003G205501 Sobic008G127400--Sobic003G205501 Sobic006G065800 Sobic006G065800 Sobic008G127400--Sobic006G065800 Sobic004G246700 Sobic004G246700 Sobic008G127400--Sobic004G246700 Sobic008G127400--Sobic008G058800 Sobic002G423200 Sobic002G423200 Sobic008G127400--Sobic002G423200 Sobic006G248500 Sobic006G248500 Sobic008G127400--Sobic006G248500 Sobic010G033400 Sobic010G033400 Sobic008G127400--Sobic010G033400 Sobic003G099300 Sobic003G099300 Sobic010G239800--Sobic003G099300 Sobic010G239800--Sobic007G027700 Sobic010G085200 Sobic010G085200 Sobic010G239800--Sobic010G085200 Sobic010G269100 Sobic010G269100 Sobic010G239800--Sobic010G269100 Sobic006G233300 Sobic006G233300 Sobic010G239800--Sobic006G233300 Sobic010G239800--Sobic010G232900 Sobic010G279700 Sobic010G279700 Sobic010G239800--Sobic010G279700 Sobic008G092300 Sobic008G092300 Sobic010G239800--Sobic008G092300 Sobic002G145800 Sobic002G145800 Sobic010G239800--Sobic002G145800 Sobic002G143900 Sobic002G143900 Sobic002G280600--Sobic002G143900 Sobic002G394800 Sobic002G394800 Sobic002G280600--Sobic002G394800 Sobic002G280600--Sobic010G232900 Sobic002G280600--Sobic007G027700 Sobic003G123000 Sobic003G123000 Sobic002G280600--Sobic003G123000 Sobic002G280600--Sobic006G233300 Sobic002G280600--Sobic010G239800 Sobic003G273400 Sobic003G273400 Sobic002G280600--Sobic003G273400 Sobic002G280600--Sobic001G526300 Sobic010G204400 Sobic010G204400 Sobic003G187200--Sobic010G204400 Sobic004G345700 Sobic004G345700 Sobic003G187200--Sobic004G345700 Sobic004G039600 Sobic004G039600 Sobic003G187200--Sobic004G039600 Sobic007G132100 Sobic007G132100 Sobic003G187200--Sobic007G132100 Sobic006G195700 Sobic006G195700 Sobic003G187200--Sobic006G195700 Sobic006G163800 Sobic006G163800 Sobic003G187200--Sobic006G163800 Sobic002G378200 Sobic002G378200 Sobic003G187200--Sobic002G378200 Sobic003G187500 Sobic003G187500 Sobic003G187200--Sobic003G187500 Sobic010G053800 Sobic010G053800 Sobic003G187200--Sobic010G053800 Sobic006G208500 Sobic006G208500 Sobic003G006400--Sobic006G208500 Sobic006G200700 Sobic006G200700 Sobic003G006400--Sobic006G200700 Sobic002G275600 Sobic002G275600 Sobic003G006400--Sobic002G275600 Sobic001G369000 Sobic001G369000 Sobic003G006400--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic003G006400--Sobic006G138000 Sobic010G151900 Sobic010G151900 Sobic003G006400--Sobic010G151900 Sobic001G145400 Sobic001G145400 Sobic003G006400--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G006400--Sobic006G077200 Sobic010G007100 Sobic010G007100 Sobic003G006400--Sobic010G007100 Sobic010G236400 Sobic010G236400 Sobic006G204800--Sobic010G236400 Sobic006G204800--Sobic006G200700 Sobic006G204800--Sobic006G195700 Sobic001G392300 Sobic001G392300 Sobic006G204800--Sobic001G392300 Sobic007G075900 Sobic007G075900 Sobic006G204800--Sobic007G075900 Sobic008G112800 Sobic008G112800 Sobic006G204800--Sobic008G112800 Sobic001G522600 Sobic001G522600 Sobic006G204800--Sobic001G522600 Sobic004G353000 Sobic004G353000 Sobic006G204800--Sobic004G353000 Sobic004G084300 Sobic004G084300 Sobic006G204800--Sobic004G084300 Sobic001G526300--Sobic007G027700 Sobic009G040800 Sobic009G040800 Sobic001G526300--Sobic009G040800 Sobic001G335900 Sobic001G335900 Sobic001G526300--Sobic001G335900 Sobic010G278600 Sobic010G278600 Sobic001G526300--Sobic010G278600 Sobic003G240700 Sobic003G240700 Sobic001G526300--Sobic003G240700 Sobic009G120500 Sobic009G120500 Sobic001G526300--Sobic009G120500 Sobic001G526300--Sobic002G143900 Sobic006G268300 Sobic006G268300 Sobic001G526300--Sobic006G268300 Sobic001G526300--Sobic010G232900
Octagon: transcription factors


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