Gene annotation
Transcriptome id Sobic.006G231400.1
Synonym Sb06g029920
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt C5YGQ8
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF372
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03560 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os07g30930.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009629
Brachypodium KQJ84836
Barley HORVU2Hr1G116650.1 , HORVU2Hr1G116650.3 , HORVU2Hr1G116650.2 , HORVU2Hr1G116650.5 , HORVU2Hr1G116650.4 , HORVU2Hr1G116650.7 , HORVU2Hr1G116650.6
Wheat TraesCS2D02G531819
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G305100 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
4 Sobic.004G007900 SNF2 family N-terminal domain containing protein, expressed K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
5 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
6 Sobic.004G111000 bromodomain containing protein, expressed -
7 Sobic.006G059500 expressed protein K13150: COIL, coilin
8 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
9 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
10 Sobic.009G099100 rust-resistance protein Lr21, putative, expressed -
11 Sobic.002G263700 bromodomain protein 103, putative, expressed -
12 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
13 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
14 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
15 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
16 Sobic.010G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
18 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
19 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
20 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -


Gene co-expression network
sample Sobic006G231400 Sobic006G231400 Sobic001G322600 Sobic001G322600 Sobic006G231400--Sobic001G322600 Sobic004G305100 Sobic004G305100 Sobic006G231400--Sobic004G305100 Sobic010G278600 Sobic010G278600 Sobic006G231400--Sobic010G278600 Sobic004G007900 Sobic004G007900 Sobic006G231400--Sobic004G007900 Sobic006G185200 Sobic006G185200 Sobic006G231400--Sobic006G185200 Sobic004G111000 Sobic004G111000 Sobic006G231400--Sobic004G111000 Sobic006G059500 Sobic006G059500 Sobic006G231400--Sobic006G059500 Sobic004G151000 Sobic004G151000 Sobic006G231400--Sobic004G151000 Sobic006G111200 Sobic006G111200 Sobic006G231400--Sobic006G111200 Sobic010G083900 Sobic010G083900 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic010G224700 Sobic010G224700 Sobic001G322600--Sobic010G224700 Sobic003G407600 Sobic003G407600 Sobic001G322600--Sobic003G407600 Sobic005G028300 Sobic005G028300 Sobic001G322600--Sobic005G028300 Sobic002G378100 Sobic002G378100 Sobic001G322600--Sobic002G378100 Sobic003G098900 Sobic003G098900 Sobic004G305100--Sobic003G098900 Sobic010G041000 Sobic010G041000 Sobic004G305100--Sobic010G041000 Sobic001G502600 Sobic001G502600 Sobic004G305100--Sobic001G502600 Sobic006G125900 Sobic006G125900 Sobic004G305100--Sobic006G125900 Sobic004G305100--Sobic006G231400 Sobic002G318800 Sobic002G318800 Sobic004G305100--Sobic002G318800 Sobic010G215900 Sobic010G215900 Sobic004G305100--Sobic010G215900 Sobic004G305100--Sobic009G163600 Sobic006G140400 Sobic006G140400 Sobic004G305100--Sobic006G140400 Sobic009G040800 Sobic009G040800 Sobic010G278600--Sobic009G040800 Sobic009G074700 Sobic009G074700 Sobic010G278600--Sobic009G074700 Sobic002G408600 Sobic002G408600 Sobic010G278600--Sobic002G408600 Sobic004G285000 Sobic004G285000 Sobic010G278600--Sobic004G285000 Sobic004G236800 Sobic004G236800 Sobic010G278600--Sobic004G236800 Sobic004G246100 Sobic004G246100 Sobic010G278600--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic010G278600--Sobic001G042200 Sobic006G131200 Sobic006G131200 Sobic010G278600--Sobic006G131200 Sobic001G393700 Sobic001G393700 Sobic010G278600--Sobic001G393700 Sobic002G340000 Sobic002G340000 Sobic004G007900--Sobic002G340000 Sobic002G235900 Sobic002G235900 Sobic004G007900--Sobic002G235900 Sobic009G099100 Sobic009G099100 Sobic004G007900--Sobic009G099100 Sobic009G154900 Sobic009G154900 Sobic004G007900--Sobic009G154900 Sobic001G448100 Sobic001G448100 Sobic004G007900--Sobic001G448100 Sobic002G079100 Sobic002G079100 Sobic004G007900--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic004G007900--Sobic008G080500 Sobic003G299500 Sobic003G299500 Sobic004G007900--Sobic003G299500 Sobic006G245900 Sobic006G245900 Sobic004G007900--Sobic006G245900 Sobic006G185200--Sobic002G378100 Sobic004G085000 Sobic004G085000 Sobic006G185200--Sobic004G085000 Sobic008G017100 Sobic008G017100 Sobic006G185200--Sobic008G017100 Sobic001G214600 Sobic001G214600 Sobic006G185200--Sobic001G214600 Sobic009G213200 Sobic009G213200 Sobic006G185200--Sobic009G213200 Sobic010G147833 Sobic010G147833 Sobic006G185200--Sobic010G147833 Sobic004G223600 Sobic004G223600 Sobic006G185200--Sobic004G223600 Sobic004G260100 Sobic004G260100 Sobic006G185200--Sobic004G260100 Sobic001G145400 Sobic001G145400 Sobic006G185200--Sobic001G145400 Sobic004G111000--Sobic004G285000 Sobic003G409200 Sobic003G409200 Sobic004G111000--Sobic003G409200 Sobic004G111000--Sobic010G215900 Sobic007G044100 Sobic007G044100 Sobic004G111000--Sobic007G044100 Sobic010G279900 Sobic010G279900 Sobic004G111000--Sobic010G279900 Sobic004G043750 Sobic004G043750 Sobic004G111000--Sobic004G043750 Sobic006G056000 Sobic006G056000 Sobic004G111000--Sobic006G056000 Sobic004G086200 Sobic004G086200 Sobic004G111000--Sobic004G086200 Sobic002G263700 Sobic002G263700 Sobic004G111000--Sobic002G263700 Sobic006G059500--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic006G059500--Sobic001G049800 Sobic002G132600 Sobic002G132600 Sobic006G059500--Sobic002G132600 Sobic006G059500--Sobic006G111200 Sobic004G215900 Sobic004G215900 Sobic006G059500--Sobic004G215900 Sobic007G060600 Sobic007G060600 Sobic006G059500--Sobic007G060600 Sobic006G059500--Sobic006G140400 Sobic001G453500 Sobic001G453500 Sobic006G059500--Sobic001G453500 Sobic009G142000 Sobic009G142000 Sobic006G059500--Sobic009G142000 Sobic004G151000--Sobic001G049800 Sobic004G027300 Sobic004G027300 Sobic004G151000--Sobic004G027300 Sobic004G151000--Sobic006G111200 Sobic004G151000--Sobic002G378100 Sobic004G151000--Sobic007G060600 Sobic002G112600 Sobic002G112600 Sobic004G151000--Sobic002G112600 Sobic004G151000--Sobic001G453500 Sobic004G151000--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic004G151000--Sobic007G059700 Sobic006G111200--Sobic001G453500 Sobic006G111200--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G111200--Sobic001G368300 Sobic006G111200--Sobic007G060600 Sobic006G111200--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G111200--Sobic006G059500 Sobic006G111200--Sobic007G059700
Octagon: transcription factors


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