Gene annotation
Transcriptome id Sobic.004G007900.1,Sobic.004G007900.2
Synonym MOM1, MOM, Sb04g000870
Functional annotation SNF2 family N-terminal domain containing protein, expressed
UniProt A0A1Z5RKB7 , C5XS67
Pfam PF00176 PF11496
Panther DB PTHR10799 PTHR10799:SF742
NCBI CDD -
KEGG Orthology K11643; CHD4, chromodomain-helicase-DNA-binding protein 4
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G08060 : ATP-dependent helicase family protein
RAP-DB (Rice) LOC_Os02g02050.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018671
Brachypodium PNT70857
Barley HORVU6Hr1G005290.38 , HORVU6Hr1G005290.39 , HORVU6Hr1G005290.36 , HORVU6Hr1G005290.37 , HORVU6Hr1G005290.34 , HORVU6Hr1G005290.35 , HORVU6Hr1G005290.32 , HORVU6Hr1G005290.30 , HORVU6Hr1G005290.31 , HORVU6Hr1G005290.40 , HORVU6Hr1G005290.14 , HORVU6Hr1G005290.15 , HORVU6Hr1G005290.11 , HORVU6Hr1G005290.12 , HORVU6Hr1G005290.13 , HORVU6Hr1G005290.33 , HORVU6Hr1G005290.6 , HORVU6Hr1G005290.7 , HORVU6Hr1G005290.5 , HORVU6Hr1G005290.1 , HORVU6Hr1G005290.29 , HORVU6Hr1G005290.28 , HORVU6Hr1G005290.21 , HORVU6Hr1G005290.20 , HORVU6Hr1G005290.25 , HORVU6Hr1G005290.24 , HORVU6Hr1G005290.27 , HORVU6Hr1G005290.26
Wheat TraesCS6D02G031700 , TraesCS6D02G031700 , TraesCS6D02G031700 , TraesCS6B02G040000 , TraesCS3D02G099500 , TraesCSU02G079800 , TraesCS3D02G099500 , TraesCS6B02G040000 , TraesCS6B02G040000 , TraesCS3A02G099100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G340000 FAR1 family protein, expressed -
2 Sobic.002G235900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
3 Sobic.009G099100 rust-resistance protein Lr21, putative, expressed -
4 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
5 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
6 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
7 Sobic.008G080500 expressed protein -
8 Sobic.003G299500 expressed protein -
9 Sobic.006G245900 FAR1 family protein, expressed -
10 Sobic.009G108400 CAAX amino terminal protease family protein, putative, expressed K08658: RCE1, prenyl protein peptidase
11 Sobic.008G092800 expressed protein -
12 Sobic.001G282300 expressed protein -
13 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
14 Sobic.010G262100 expressed protein -
15 Sobic.002G011100 expressed protein -
16 Sobic.003G016500 histone-lysine N-methyltransferase ATX5, putative, expressed -
17 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
18 Sobic.004G342300 expressed protein -
19 Sobic.007G094500 KH domain containing protein, putative, expressed -
20 Sobic.001G436600 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic004G007900 Sobic004G007900 Sobic002G340000 Sobic002G340000 Sobic004G007900--Sobic002G340000 Sobic002G235900 Sobic002G235900 Sobic004G007900--Sobic002G235900 Sobic009G099100 Sobic009G099100 Sobic004G007900--Sobic009G099100 Sobic009G154900 Sobic009G154900 Sobic004G007900--Sobic009G154900 Sobic001G448100 Sobic001G448100 Sobic004G007900--Sobic001G448100 Sobic002G079100 Sobic002G079100 Sobic004G007900--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic004G007900--Sobic008G080500 Sobic003G299500 Sobic003G299500 Sobic004G007900--Sobic003G299500 Sobic006G245900 Sobic006G245900 Sobic004G007900--Sobic006G245900 Sobic001G308400 Sobic001G308400 Sobic002G340000--Sobic001G308400 Sobic002G340000--Sobic004G007900 Sobic007G019300 Sobic007G019300 Sobic002G340000--Sobic007G019300 Sobic005G059500 Sobic005G059500 Sobic002G340000--Sobic005G059500 Sobic005G114500 Sobic005G114500 Sobic002G340000--Sobic005G114500 Sobic001G384400 Sobic001G384400 Sobic002G340000--Sobic001G384400 Sobic001G012900 Sobic001G012900 Sobic002G340000--Sobic001G012900 Sobic001G282300 Sobic001G282300 Sobic002G340000--Sobic001G282300 Sobic008G124800 Sobic008G124800 Sobic002G340000--Sobic008G124800 Sobic002G235900--Sobic004G007900 Sobic002G235900--Sobic003G299500 Sobic002G235900--Sobic008G080500 Sobic002G235900--Sobic002G079100 Sobic002G235900--Sobic001G448100 Sobic009G102000 Sobic009G102000 Sobic002G235900--Sobic009G102000 Sobic004G106250 Sobic004G106250 Sobic002G235900--Sobic004G106250 Sobic009G000400 Sobic009G000400 Sobic002G235900--Sobic009G000400 Sobic003G016500 Sobic003G016500 Sobic002G235900--Sobic003G016500 Sobic009G099100--Sobic004G007900 Sobic010G262100 Sobic010G262100 Sobic009G099100--Sobic010G262100 Sobic009G099100--Sobic008G080500 Sobic001G437400 Sobic001G437400 Sobic009G099100--Sobic001G437400 Sobic004G342300 Sobic004G342300 Sobic009G099100--Sobic004G342300 Sobic006G112700 Sobic006G112700 Sobic009G099100--Sobic006G112700 Sobic008G092800 Sobic008G092800 Sobic009G099100--Sobic008G092800 Sobic003G250900 Sobic003G250900 Sobic009G099100--Sobic003G250900 Sobic009G099100--Sobic003G016500 Sobic006G262800 Sobic006G262800 Sobic009G154900--Sobic006G262800 Sobic001G043200 Sobic001G043200 Sobic009G154900--Sobic001G043200 Sobic003G194800 Sobic003G194800 Sobic009G154900--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G154900--Sobic004G215600 Sobic009G154900--Sobic004G007900 Sobic009G108400 Sobic009G108400 Sobic009G154900--Sobic009G108400 Sobic004G194100 Sobic004G194100 Sobic009G154900--Sobic004G194100 Sobic009G154900--Sobic001G448100 Sobic005G123400 Sobic005G123400 Sobic009G154900--Sobic005G123400 Sobic001G448100--Sobic002G079100 Sobic003G397100 Sobic003G397100 Sobic001G448100--Sobic003G397100 Sobic001G448100--Sobic004G007900 Sobic001G448100--Sobic002G235900 Sobic002G380100 Sobic002G380100 Sobic001G448100--Sobic002G380100 Sobic001G448100--Sobic009G154900 Sobic001G522400 Sobic001G522400 Sobic001G448100--Sobic001G522400 Sobic001G448100--Sobic009G000400 Sobic003G067201 Sobic003G067201 Sobic001G448100--Sobic003G067201 Sobic003G124600 Sobic003G124600 Sobic002G079100--Sobic003G124600 Sobic002G079100--Sobic001G448100 Sobic008G017100 Sobic008G017100 Sobic002G079100--Sobic008G017100 Sobic002G079100--Sobic008G080500 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic007G159200 Sobic007G159200 Sobic008G080500--Sobic007G159200 Sobic008G080500--Sobic010G262100 Sobic004G355800 Sobic004G355800 Sobic008G080500--Sobic004G355800 Sobic008G080500--Sobic006G112700 Sobic008G080500--Sobic002G079100 Sobic005G200900 Sobic005G200900 Sobic008G080500--Sobic005G200900 Sobic010G269300 Sobic010G269300 Sobic008G080500--Sobic010G269300 Sobic008G080500--Sobic003G299500 Sobic008G080500--Sobic002G235900 Sobic007G034200 Sobic007G034200 Sobic003G299500--Sobic007G034200 Sobic003G299500--Sobic003G194800 Sobic003G299500--Sobic004G106250 Sobic009G120400 Sobic009G120400 Sobic003G299500--Sobic009G120400 Sobic003G299500--Sobic003G016500 Sobic001G123600 Sobic001G123600 Sobic003G299500--Sobic001G123600 Sobic003G299500--Sobic006G245900 Sobic003G299500--Sobic002G235900 Sobic006G191200 Sobic006G191200 Sobic003G299500--Sobic006G191200 Sobic002G371600 Sobic002G371600 Sobic006G245900--Sobic002G371600 Sobic002G296400 Sobic002G296400 Sobic006G245900--Sobic002G296400 Sobic004G031300 Sobic004G031300 Sobic006G245900--Sobic004G031300 Sobic007G016900 Sobic007G016900 Sobic006G245900--Sobic007G016900 Sobic006G245900--Sobic002G292800 Sobic007G145400 Sobic007G145400 Sobic006G245900--Sobic007G145400 Sobic002G252100 Sobic002G252100 Sobic006G245900--Sobic002G252100 Sobic003G308500 Sobic003G308500 Sobic006G245900--Sobic003G308500 Sobic001G346900 Sobic001G346900 Sobic006G245900--Sobic001G346900
Octagon: transcription factors


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