Gene annotation
Transcriptome id Sobic.002G052400.1
Synonym Sb02g004410
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1W0W2B9
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF384
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20740 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os07g08180.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a045169 , Zm00025a052184
Brachypodium KQK20601 , KQK20600 , PNT76917 , PNT76916
Barley HORVU2Hr1G056510.9 , HORVU2Hr1G056510.8 , HORVU2Hr1G056510.5 , HORVU2Hr1G056510.4 , HORVU2Hr1G056510.7 , HORVU2Hr1G056510.6 , HORVU2Hr1G056510.1 , HORVU2Hr1G056510.3 , HORVU2Hr1G056510.2 , HORVU2Hr1G057760.1 , HORVU2Hr1G056510.11
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G052400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G351800 PPR repeat containing protein, expressed -
2 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
3 Sobic.002G377800 heat shock protein DnaJ, putative, expressed -
4 Sobic.009G105200 PPR repeat containing protein, expressed -
5 Sobic.007G145100 SGT1 protein, putative, expressed -
6 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
7 Sobic.002G373950 - -
8 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
9 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
10 Sobic.004G027300 expressed protein -
11 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
12 Sobic.001G544500 expressed protein -
13 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
14 Sobic.003G445500 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
15 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
16 Sobic.010G224700 - K17680: twinkle protein
17 Sobic.006G013100 expressed protein K13205: AAR2, A1 cistron-splicing factor AAR2
18 Sobic.010G066400 PPR repeat domain containing protein, putative, expressed -
19 Sobic.002G082100 serine/threonine-protein kinase, putative, expressed -
20 Sobic.001G393900 FAD binding domain containing protein, expressed -


Gene co-expression network
sample Sobic002G052400 Sobic002G052400 Sobic004G351800 Sobic004G351800 Sobic002G052400--Sobic004G351800 Sobic008G017100 Sobic008G017100 Sobic002G052400--Sobic008G017100 Sobic002G377800 Sobic002G377800 Sobic002G052400--Sobic002G377800 Sobic009G105200 Sobic009G105200 Sobic002G052400--Sobic009G105200 Sobic007G145100 Sobic007G145100 Sobic002G052400--Sobic007G145100 Sobic001G261900 Sobic001G261900 Sobic002G052400--Sobic001G261900 Sobic002G373950 Sobic002G373950 Sobic002G052400--Sobic002G373950 Sobic008G022701 Sobic008G022701 Sobic002G052400--Sobic008G022701 Sobic010G228700 Sobic010G228700 Sobic002G052400--Sobic010G228700 Sobic001G417500 Sobic001G417500 Sobic004G351800--Sobic001G417500 Sobic004G351800--Sobic008G017100 Sobic004G351800--Sobic001G261900 Sobic006G269800 Sobic006G269800 Sobic004G351800--Sobic006G269800 Sobic004G107200 Sobic004G107200 Sobic004G351800--Sobic004G107200 Sobic004G351800--Sobic002G052400 Sobic001G326300 Sobic001G326300 Sobic004G351800--Sobic001G326300 Sobic007G173500 Sobic007G173500 Sobic004G351800--Sobic007G173500 Sobic006G128400 Sobic006G128400 Sobic004G351800--Sobic006G128400 Sobic004G119400 Sobic004G119400 Sobic008G017100--Sobic004G119400 Sobic008G017100--Sobic006G269800 Sobic010G224700 Sobic010G224700 Sobic008G017100--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic008G017100--Sobic006G185200 Sobic002G079100 Sobic002G079100 Sobic008G017100--Sobic002G079100 Sobic002G378100 Sobic002G378100 Sobic008G017100--Sobic002G378100 Sobic008G017100--Sobic004G351800 Sobic007G171100 Sobic007G171100 Sobic008G017100--Sobic007G171100 Sobic008G147200 Sobic008G147200 Sobic008G017100--Sobic008G147200 Sobic002G377800--Sobic007G145100 Sobic002G082100 Sobic002G082100 Sobic002G377800--Sobic002G082100 Sobic002G377800--Sobic002G052400 Sobic002G377800--Sobic009G105200 Sobic002G377800--Sobic008G022701 Sobic010G138900 Sobic010G138900 Sobic002G377800--Sobic010G138900 Sobic002G184400 Sobic002G184400 Sobic002G377800--Sobic002G184400 Sobic001G544500 Sobic001G544500 Sobic002G377800--Sobic001G544500 Sobic003G209400 Sobic003G209400 Sobic002G377800--Sobic003G209400 Sobic009G105200--Sobic010G228700 Sobic009G105200--Sobic001G544500 Sobic007G000300 Sobic007G000300 Sobic009G105200--Sobic007G000300 Sobic009G005400 Sobic009G005400 Sobic009G105200--Sobic009G005400 Sobic006G275000 Sobic006G275000 Sobic009G105200--Sobic006G275000 Sobic009G105200--Sobic002G052400 Sobic007G225000 Sobic007G225000 Sobic009G105200--Sobic007G225000 Sobic010G100800 Sobic010G100800 Sobic009G105200--Sobic010G100800 Sobic009G105200--Sobic001G261900 Sobic007G145100--Sobic002G377800 Sobic007G145100--Sobic001G544500 Sobic007G145100--Sobic010G228700 Sobic002G399200 Sobic002G399200 Sobic007G145100--Sobic002G399200 Sobic007G145100--Sobic002G052400 Sobic005G100900 Sobic005G100900 Sobic007G145100--Sobic005G100900 Sobic001G362300 Sobic001G362300 Sobic007G145100--Sobic001G362300 Sobic001G119600 Sobic001G119600 Sobic007G145100--Sobic001G119600 Sobic007G145100--Sobic008G022701 Sobic001G261900--Sobic010G100800 Sobic007G212300 Sobic007G212300 Sobic001G261900--Sobic007G212300 Sobic001G261900--Sobic004G107200 Sobic004G176000 Sobic004G176000 Sobic001G261900--Sobic004G176000 Sobic006G119400 Sobic006G119400 Sobic001G261900--Sobic006G119400 Sobic008G132900 Sobic008G132900 Sobic001G261900--Sobic008G132900 Sobic001G261900--Sobic004G351800 Sobic001G261900--Sobic007G000300 Sobic007G065100 Sobic007G065100 Sobic001G261900--Sobic007G065100 Sobic006G086600 Sobic006G086600 Sobic002G373950--Sobic006G086600 Sobic010G003400 Sobic010G003400 Sobic002G373950--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic002G373950--Sobic001G453400 Sobic009G213200 Sobic009G213200 Sobic002G373950--Sobic009G213200 Sobic010G174700 Sobic010G174700 Sobic002G373950--Sobic010G174700 Sobic003G260400 Sobic003G260400 Sobic002G373950--Sobic003G260400 Sobic010G115400 Sobic010G115400 Sobic002G373950--Sobic010G115400 Sobic001G089600 Sobic001G089600 Sobic002G373950--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic002G373950--Sobic010G102600 Sobic003G332900 Sobic003G332900 Sobic008G022701--Sobic003G332900 Sobic001G008000 Sobic001G008000 Sobic008G022701--Sobic001G008000 Sobic008G022701--Sobic001G119600 Sobic008G022701--Sobic002G052400 Sobic008G022701--Sobic007G145100 Sobic008G022701--Sobic005G100900 Sobic001G157300 Sobic001G157300 Sobic008G022701--Sobic001G157300 Sobic001G502600 Sobic001G502600 Sobic008G022701--Sobic001G502600 Sobic004G027300 Sobic004G027300 Sobic008G022701--Sobic004G027300 Sobic010G228700--Sobic001G544500 Sobic002G040800 Sobic002G040800 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic010G228700--Sobic009G105200 Sobic010G171100 Sobic010G171100 Sobic010G228700--Sobic010G171100 Sobic010G228700--Sobic007G000300 Sobic002G238000 Sobic002G238000 Sobic010G228700--Sobic002G238000 Sobic001G119900 Sobic001G119900 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.