Gene annotation
Transcriptome id Sobic.010G066400.1,Sobic.010G066400.2
Synonym Sb10g005740
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5Z5T4
Pfam PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF355
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25210 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os06g08570.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a049753
Brachypodium -
Barley HORVU0Hr1G019610.1 , HORVU0Hr1G019610.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G000300 expressed protein -
2 Sobic.010G033600 BRCA1 C Terminus domain containing protein, expressed K10803: DNA-repair protein XRCC1
3 Sobic.001G393900 FAD binding domain containing protein, expressed -
4 Sobic.003G362900 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
5 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
6 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
7 Sobic.006G169500 L-asparaginase precursor protein, putative, expressed K01444: AGA, N4-(beta-N-acetylglucosaminyl)-L-asparaginase
8 Sobic.002G155000 EMB1381, putative, expressed -
9 Sobic.002G292800 MORN repeat domain containing protein, expressed -
10 Sobic.001G466500 PPR repeat containing protein, expressed -
11 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
12 Sobic.009G105200 PPR repeat containing protein, expressed -
13 Sobic.001G250700 expressed protein -
14 Sobic.008G185800 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
15 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
16 Sobic.002G052400 PPR repeat containing protein, expressed -
17 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
19 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
20 Sobic.003G218200 pentatricopeptide containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G066400 Sobic010G066400 Sobic007G000300 Sobic007G000300 Sobic010G066400--Sobic007G000300 Sobic010G033600 Sobic010G033600 Sobic010G066400--Sobic010G033600 Sobic001G393900 Sobic001G393900 Sobic010G066400--Sobic001G393900 Sobic003G362900 Sobic003G362900 Sobic010G066400--Sobic003G362900 Sobic003G012000 Sobic003G012000 Sobic010G066400--Sobic003G012000 Sobic005G026400 Sobic005G026400 Sobic010G066400--Sobic005G026400 Sobic006G169500 Sobic006G169500 Sobic010G066400--Sobic006G169500 Sobic002G155000 Sobic002G155000 Sobic010G066400--Sobic002G155000 Sobic002G292800 Sobic002G292800 Sobic010G066400--Sobic002G292800 Sobic001G275300 Sobic001G275300 Sobic007G000300--Sobic001G275300 Sobic003G241700 Sobic003G241700 Sobic007G000300--Sobic003G241700 Sobic007G000300--Sobic001G393900 Sobic006G088200 Sobic006G088200 Sobic007G000300--Sobic006G088200 Sobic003G062300 Sobic003G062300 Sobic007G000300--Sobic003G062300 Sobic003G016900 Sobic003G016900 Sobic007G000300--Sobic003G016900 Sobic001G261900 Sobic001G261900 Sobic007G000300--Sobic001G261900 Sobic007G212300 Sobic007G212300 Sobic007G000300--Sobic007G212300 Sobic007G173500 Sobic007G173500 Sobic007G000300--Sobic007G173500 Sobic006G216200 Sobic006G216200 Sobic010G033600--Sobic006G216200 Sobic001G156900 Sobic001G156900 Sobic010G033600--Sobic001G156900 Sobic006G281700 Sobic006G281700 Sobic010G033600--Sobic006G281700 Sobic004G122900 Sobic004G122900 Sobic010G033600--Sobic004G122900 Sobic003G182300 Sobic003G182300 Sobic010G033600--Sobic003G182300 Sobic009G122500 Sobic009G122500 Sobic010G033600--Sobic009G122500 Sobic010G033600--Sobic003G012000 Sobic004G096400 Sobic004G096400 Sobic010G033600--Sobic004G096400 Sobic003G230600 Sobic003G230600 Sobic010G033600--Sobic003G230600 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic001G393900--Sobic004G096400 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic003G362900--Sobic004G321700 Sobic003G362900--Sobic001G393900 Sobic002G145800 Sobic002G145800 Sobic003G362900--Sobic002G145800 Sobic002G052700 Sobic002G052700 Sobic003G362900--Sobic002G052700 Sobic008G147200 Sobic008G147200 Sobic003G362900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic003G362900--Sobic004G285000 Sobic003G362900--Sobic006G269800 Sobic004G309900 Sobic004G309900 Sobic003G362900--Sobic004G309900 Sobic007G011600 Sobic007G011600 Sobic003G362900--Sobic007G011600 Sobic010G059500 Sobic010G059500 Sobic003G012000--Sobic010G059500 Sobic003G308500 Sobic003G308500 Sobic003G012000--Sobic003G308500 Sobic003G012000--Sobic001G393900 Sobic003G146600 Sobic003G146600 Sobic003G012000--Sobic003G146600 Sobic003G012000--Sobic004G096400 Sobic001G405600 Sobic001G405600 Sobic003G012000--Sobic001G405600 Sobic003G043000 Sobic003G043000 Sobic003G012000--Sobic003G043000 Sobic006G234700 Sobic006G234700 Sobic003G012000--Sobic006G234700 Sobic003G256800 Sobic003G256800 Sobic003G012000--Sobic003G256800 Sobic002G398700 Sobic002G398700 Sobic005G026400--Sobic002G398700 Sobic005G026400--Sobic003G146600 Sobic004G224600 Sobic004G224600 Sobic005G026400--Sobic004G224600 Sobic002G235200 Sobic002G235200 Sobic005G026400--Sobic002G235200 Sobic005G026400--Sobic003G308500 Sobic002G356200 Sobic002G356200 Sobic005G026400--Sobic002G356200 Sobic005G026400--Sobic003G012000 Sobic003G143800 Sobic003G143800 Sobic005G026400--Sobic003G143800 Sobic001G015400 Sobic001G015400 Sobic005G026400--Sobic001G015400 Sobic006G169500--Sobic007G000300 Sobic006G169500--Sobic001G393900 Sobic008G140700 Sobic008G140700 Sobic006G169500--Sobic008G140700 Sobic001G248100 Sobic001G248100 Sobic006G169500--Sobic001G248100 Sobic010G089800 Sobic010G089800 Sobic006G169500--Sobic010G089800 Sobic008G054600 Sobic008G054600 Sobic006G169500--Sobic008G054600 Sobic001G250700 Sobic001G250700 Sobic006G169500--Sobic001G250700 Sobic001G453000 Sobic001G453000 Sobic006G169500--Sobic001G453000 Sobic006G073200 Sobic006G073200 Sobic006G169500--Sobic006G073200 Sobic007G075800 Sobic007G075800 Sobic002G155000--Sobic007G075800 Sobic002G031700 Sobic002G031700 Sobic002G155000--Sobic002G031700 Sobic006G128400 Sobic006G128400 Sobic002G155000--Sobic006G128400 Sobic002G317100 Sobic002G317100 Sobic002G155000--Sobic002G317100 Sobic003G134000 Sobic003G134000 Sobic002G155000--Sobic003G134000 Sobic001G153300 Sobic001G153300 Sobic002G155000--Sobic001G153300 Sobic007G132200 Sobic007G132200 Sobic002G155000--Sobic007G132200 Sobic002G155000--Sobic001G393900 Sobic002G155000--Sobic006G269800 Sobic004G097900 Sobic004G097900 Sobic002G292800--Sobic004G097900 Sobic006G245900 Sobic006G245900 Sobic002G292800--Sobic006G245900 Sobic002G079100 Sobic002G079100 Sobic002G292800--Sobic002G079100 Sobic002G386900 Sobic002G386900 Sobic002G292800--Sobic002G386900 Sobic006G191200 Sobic006G191200 Sobic002G292800--Sobic006G191200 Sobic002G063900 Sobic002G063900 Sobic002G292800--Sobic002G063900 Sobic003G124600 Sobic003G124600 Sobic002G292800--Sobic003G124600 Sobic006G170900 Sobic006G170900 Sobic002G292800--Sobic006G170900 Sobic001G495400 Sobic001G495400 Sobic002G292800--Sobic001G495400
Octagon: transcription factors


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