Gene annotation
Transcriptome id Sobic.010G033600.1
Synonym Sb10g003040, ATXRCC1
Functional annotation BRCA1 C Terminus domain containing protein, expressed
UniProt C5Z3V7
Pfam PF12738
Panther DB PTHR11370
NCBI CDD -
KEGG Orthology K10803; DNA-repair protein XRCC1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80420 : BRCT domain-containing DNA repair protein
RAP-DB (Rice) LOC_Os06g05190.1 : BRCA1 C Terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050057
Brachypodium KQK19915
Barley HORVU7Hr1G019990.1 , HORVU7Hr1G019990.2 , HORVU7Hr1G019990.4 , HORVU7Hr1G019990.6
Wheat TraesCS7D02G083800 , TraesCS7D02G083800 , TraesCS4A02G388300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G216200 expressed protein -
2 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.006G281700 DUF803 domain containing, putative, expressed -
4 Sobic.004G122900 gamma-secretase subunit APH-1B, putative, expressed -
5 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
6 Sobic.009G122500 expressed protein -
7 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
8 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
9 Sobic.003G230600 transcription factor X1, putative, expressed -
10 Sobic.010G223400 expressed protein -
11 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
12 Sobic.002G131400 GPI mannosyltransferase 1, putative, expressed K05284: GPI mannosyltransferase 1 subunit M
13 Sobic.001G526300 WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
14 Sobic.005G114500 growth regulator related protein, putative, expressed -
15 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
16 Sobic.001G276200 ACI13, putative, expressed -
17 Sobic.006G245900 FAR1 family protein, expressed -
18 Sobic.002G340000 FAR1 family protein, expressed -
19 Sobic.001G492200 OsFBK11 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.001G043200 expressed protein -


Gene co-expression network
sample Sobic010G033600 Sobic010G033600 Sobic006G216200 Sobic006G216200 Sobic010G033600--Sobic006G216200 Sobic001G156900 Sobic001G156900 Sobic010G033600--Sobic001G156900 Sobic006G281700 Sobic006G281700 Sobic010G033600--Sobic006G281700 Sobic004G122900 Sobic004G122900 Sobic010G033600--Sobic004G122900 Sobic003G182300 Sobic003G182300 Sobic010G033600--Sobic003G182300 Sobic009G122500 Sobic009G122500 Sobic010G033600--Sobic009G122500 Sobic003G012000 Sobic003G012000 Sobic010G033600--Sobic003G012000 Sobic004G096400 Sobic004G096400 Sobic010G033600--Sobic004G096400 Sobic003G230600 Sobic003G230600 Sobic010G033600--Sobic003G230600 Sobic006G216200--Sobic010G033600 Sobic006G216200--Sobic006G281700 Sobic001G014300 Sobic001G014300 Sobic006G216200--Sobic001G014300 Sobic010G080550 Sobic010G080550 Sobic006G216200--Sobic010G080550 Sobic009G128500 Sobic009G128500 Sobic006G216200--Sobic009G128500 Sobic006G216200--Sobic004G096400 Sobic010G254900 Sobic010G254900 Sobic006G216200--Sobic010G254900 Sobic004G223300 Sobic004G223300 Sobic006G216200--Sobic004G223300 Sobic002G241600 Sobic002G241600 Sobic006G216200--Sobic002G241600 Sobic001G156900--Sobic009G122500 Sobic002G119600 Sobic002G119600 Sobic001G156900--Sobic002G119600 Sobic001G308400 Sobic001G308400 Sobic001G156900--Sobic001G308400 Sobic002G227500 Sobic002G227500 Sobic001G156900--Sobic002G227500 Sobic001G156900--Sobic004G122900 Sobic001G335000 Sobic001G335000 Sobic001G156900--Sobic001G335000 Sobic010G169900 Sobic010G169900 Sobic001G156900--Sobic010G169900 Sobic003G181700 Sobic003G181700 Sobic001G156900--Sobic003G181700 Sobic005G110499 Sobic005G110499 Sobic001G156900--Sobic005G110499 Sobic002G063900 Sobic002G063900 Sobic006G281700--Sobic002G063900 Sobic002G260400 Sobic002G260400 Sobic006G281700--Sobic002G260400 Sobic004G246100 Sobic004G246100 Sobic006G281700--Sobic004G246100 Sobic003G160000 Sobic003G160000 Sobic006G281700--Sobic003G160000 Sobic009G260650 Sobic009G260650 Sobic006G281700--Sobic009G260650 Sobic001G042200 Sobic001G042200 Sobic006G281700--Sobic001G042200 Sobic007G218000 Sobic007G218000 Sobic006G281700--Sobic007G218000 Sobic010G204400 Sobic010G204400 Sobic006G281700--Sobic010G204400 Sobic002G056701 Sobic002G056701 Sobic006G281700--Sobic002G056701 Sobic004G122900--Sobic003G181700 Sobic004G122900--Sobic009G122500 Sobic009G194000 Sobic009G194000 Sobic004G122900--Sobic009G194000 Sobic004G122900--Sobic001G156900 Sobic001G043200 Sobic001G043200 Sobic004G122900--Sobic001G043200 Sobic004G122900--Sobic001G335000 Sobic004G122900--Sobic001G308400 Sobic003G021600 Sobic003G021600 Sobic004G122900--Sobic003G021600 Sobic004G122900--Sobic002G227500 Sobic010G223400 Sobic010G223400 Sobic003G182300--Sobic010G223400 Sobic003G363700 Sobic003G363700 Sobic003G182300--Sobic003G363700 Sobic001G449900 Sobic001G449900 Sobic003G182300--Sobic001G449900 Sobic001G474400 Sobic001G474400 Sobic003G182300--Sobic001G474400 Sobic003G193500 Sobic003G193500 Sobic003G182300--Sobic003G193500 Sobic003G182300--Sobic010G169900 Sobic001G015400 Sobic001G015400 Sobic003G182300--Sobic001G015400 Sobic007G042900 Sobic007G042900 Sobic003G182300--Sobic007G042900 Sobic003G182300--Sobic003G181700 Sobic009G122500--Sobic001G335000 Sobic004G060300 Sobic004G060300 Sobic009G122500--Sobic004G060300 Sobic009G122500--Sobic001G156900 Sobic009G122500--Sobic004G122900 Sobic009G122500--Sobic010G223400 Sobic009G122500--Sobic001G308400 Sobic003G394200 Sobic003G394200 Sobic009G122500--Sobic003G394200 Sobic001G389200 Sobic001G389200 Sobic009G122500--Sobic001G389200 Sobic001G118000 Sobic001G118000 Sobic009G122500--Sobic001G118000 Sobic010G059500 Sobic010G059500 Sobic003G012000--Sobic010G059500 Sobic003G308500 Sobic003G308500 Sobic003G012000--Sobic003G308500 Sobic001G393900 Sobic001G393900 Sobic003G012000--Sobic001G393900 Sobic003G146600 Sobic003G146600 Sobic003G012000--Sobic003G146600 Sobic003G012000--Sobic004G096400 Sobic001G405600 Sobic001G405600 Sobic003G012000--Sobic001G405600 Sobic003G043000 Sobic003G043000 Sobic003G012000--Sobic003G043000 Sobic006G234700 Sobic006G234700 Sobic003G012000--Sobic006G234700 Sobic003G256800 Sobic003G256800 Sobic003G012000--Sobic003G256800 Sobic004G096400--Sobic006G234700 Sobic009G192300 Sobic009G192300 Sobic004G096400--Sobic009G192300 Sobic004G096400--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic004G096400--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic004G096400--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic004G096400--Sobic001G433800 Sobic003G249600 Sobic003G249600 Sobic004G096400--Sobic003G249600 Sobic006G077200 Sobic006G077200 Sobic004G096400--Sobic006G077200 Sobic007G132100 Sobic007G132100 Sobic004G096400--Sobic007G132100 Sobic005G114500 Sobic005G114500 Sobic003G230600--Sobic005G114500 Sobic001G125500 Sobic001G125500 Sobic003G230600--Sobic001G125500 Sobic003G230600--Sobic009G128500 Sobic003G230600--Sobic001G308400 Sobic007G145400 Sobic007G145400 Sobic003G230600--Sobic007G145400 Sobic008G092800 Sobic008G092800 Sobic003G230600--Sobic008G092800 Sobic003G143800 Sobic003G143800 Sobic003G230600--Sobic003G143800 Sobic002G363800 Sobic002G363800 Sobic003G230600--Sobic002G363800 Sobic001G097500 Sobic001G097500 Sobic003G230600--Sobic001G097500
Octagon: transcription factors


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