Gene annotation
Transcriptome id Sobic.008G185800.1
Synonym Sb08g022730
Functional annotation translation initiation factor IF-3, putative, expressed
UniProt C5YSY5
Pfam PF00707 PF05198
Panther DB PTHR10938 PTHR10938:SF2
NCBI CDD -
KEGG Orthology K02520; infC, translation initiation factor IF-3
Gene Ontology GO:0006413; translational initiation GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT1G34360 : translation initiation factor 3 (IF-3) family protein
RAP-DB (Rice) LOC_Os02g01110.1 : translation initiation factor IF-3, putative, expressed
MaizeGDB (Corn) Zm00025a025112
Brachypodium PNT65652 , PNT65653 , KQJ92728 , KQJ92729
Barley HORVU6Hr1G001490.1 , HORVU6Hr1G001490.2 , HORVU6Hr1G001490.3 , HORVU6Hr1G001490.4 , HORVU6Hr1G001490.5 , HORVU6Hr1G001490.6 , HORVU6Hr1G001490.7 , HORVU6Hr1G001490.8 , HORVU6Hr1G001490.9 , HORVU5Hr1G108770.1 , HORVU5Hr1G108770.6 , HORVU5Hr1G108770.8 , HORVU5Hr1G108770.4 , HORVU5Hr1G108770.5 , HORVU5Hr1G108770.9 , HORVU5Hr1G108770.10 , HORVU5Hr1G108770.2 , HORVU5Hr1G108770.3 , HORVU5Hr1G108770.7 , HORVU6Hr1G001490.10
Wheat TraesCS5A02G452000 , TraesCS5D02G462200 , TraesCS5B02G460700
Populus -


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cDNA sequences
Sobic.008G185800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G093300 expressed protein K02519: infB, translation initiation factor IF-2
2 Sobic.009G192300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
3 Sobic.003G241700 SET domain containing protein, expressed -
4 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
5 Sobic.001G030000 FG-GAP repeat-containing protein, putative, expressed -
6 Sobic.010G226000 expressed protein -
7 Sobic.010G275400 expressed protein -
8 Sobic.001G503900 MT-A70 domain containing protein, expressed -
9 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
10 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
11 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
12 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
13 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
14 Sobic.003G311900 CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed -
15 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
16 Sobic.007G000300 expressed protein -
17 Sobic.009G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G296900 expressed protein -
19 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G185800 Sobic008G185800 Sobic006G093300 Sobic006G093300 Sobic008G185800--Sobic006G093300 Sobic009G192300 Sobic009G192300 Sobic008G185800--Sobic009G192300 Sobic003G241700 Sobic003G241700 Sobic008G185800--Sobic003G241700 Sobic006G184900 Sobic006G184900 Sobic008G185800--Sobic006G184900 Sobic001G030000 Sobic001G030000 Sobic008G185800--Sobic001G030000 Sobic010G226000 Sobic010G226000 Sobic008G185800--Sobic010G226000 Sobic010G275400 Sobic010G275400 Sobic008G185800--Sobic010G275400 Sobic001G503900 Sobic001G503900 Sobic008G185800--Sobic001G503900 Sobic010G169900 Sobic010G169900 Sobic008G185800--Sobic010G169900 Sobic006G039400 Sobic006G039400 Sobic006G093300--Sobic006G039400 Sobic001G434200 Sobic001G434200 Sobic006G093300--Sobic001G434200 Sobic006G093300--Sobic008G185800 Sobic006G093300--Sobic003G241700 Sobic001G283600 Sobic001G283600 Sobic006G093300--Sobic001G283600 Sobic001G333100 Sobic001G333100 Sobic006G093300--Sobic001G333100 Sobic003G308500 Sobic003G308500 Sobic006G093300--Sobic003G308500 Sobic003G296900 Sobic003G296900 Sobic006G093300--Sobic003G296900 Sobic006G093300--Sobic006G184900 Sobic004G096400 Sobic004G096400 Sobic009G192300--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic009G192300--Sobic006G234700 Sobic010G059500 Sobic010G059500 Sobic009G192300--Sobic010G059500 Sobic010G034100 Sobic010G034100 Sobic009G192300--Sobic010G034100 Sobic009G084900 Sobic009G084900 Sobic009G192300--Sobic009G084900 Sobic003G444800 Sobic003G444800 Sobic009G192300--Sobic003G444800 Sobic002G260400 Sobic002G260400 Sobic009G192300--Sobic002G260400 SobicK028600 SobicK028600 Sobic009G192300--SobicK028600 Sobic007G125000 Sobic007G125000 Sobic009G192300--Sobic007G125000 Sobic003G043000 Sobic003G043000 Sobic003G241700--Sobic003G043000 Sobic003G241700--Sobic003G296900 Sobic009G228000 Sobic009G228000 Sobic003G241700--Sobic009G228000 Sobic004G209700 Sobic004G209700 Sobic003G241700--Sobic004G209700 Sobic004G265500 Sobic004G265500 Sobic003G241700--Sobic004G265500 Sobic010G000800 Sobic010G000800 Sobic003G241700--Sobic010G000800 Sobic003G241700--Sobic006G234700 Sobic004G213800 Sobic004G213800 Sobic003G241700--Sobic004G213800 Sobic003G241700--Sobic010G034100 Sobic002G335600 Sobic002G335600 Sobic006G184900--Sobic002G335600 Sobic002G429300 Sobic002G429300 Sobic006G184900--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic006G184900--Sobic008G088872 Sobic002G042600 Sobic002G042600 Sobic006G184900--Sobic002G042600 Sobic001G370900 Sobic001G370900 Sobic006G184900--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic006G184900--Sobic009G131300 Sobic001G493700 Sobic001G493700 Sobic006G184900--Sobic001G493700 Sobic002G179400 Sobic002G179400 Sobic006G184900--Sobic002G179400 Sobic005G062200 Sobic005G062200 Sobic006G184900--Sobic005G062200 Sobic001G308400 Sobic001G308400 Sobic001G030000--Sobic001G308400 Sobic004G141800 Sobic004G141800 Sobic001G030000--Sobic004G141800 Sobic001G030000--Sobic010G169900 Sobic001G030000--Sobic003G043000 Sobic001G030000--Sobic004G265500 Sobic002G227500 Sobic002G227500 Sobic001G030000--Sobic002G227500 Sobic005G110499 Sobic005G110499 Sobic001G030000--Sobic005G110499 Sobic003G405500 Sobic003G405500 Sobic001G030000--Sobic003G405500 Sobic003G163200 Sobic003G163200 Sobic001G030000--Sobic003G163200 Sobic001G451400 Sobic001G451400 Sobic010G226000--Sobic001G451400 Sobic009G256400 Sobic009G256400 Sobic010G226000--Sobic009G256400 Sobic010G226000--Sobic004G209700 Sobic009G165700 Sobic009G165700 Sobic010G226000--Sobic009G165700 Sobic003G166750 Sobic003G166750 Sobic010G226000--Sobic003G166750 Sobic001G441400 Sobic001G441400 Sobic010G226000--Sobic001G441400 Sobic001G457800 Sobic001G457800 Sobic010G226000--Sobic001G457800 Sobic001G111850 Sobic001G111850 Sobic010G226000--Sobic001G111850 Sobic010G226000--Sobic003G444800 Sobic010G275400--Sobic001G441400 Sobic010G275400--Sobic010G226000 Sobic009G068500 Sobic009G068500 Sobic010G275400--Sobic009G068500 Sobic003G264100 Sobic003G264100 Sobic010G275400--Sobic003G264100 Sobic004G252900 Sobic004G252900 Sobic010G275400--Sobic004G252900 Sobic004G028100 Sobic004G028100 Sobic010G275400--Sobic004G028100 Sobic010G275400--Sobic008G185800 Sobic006G174850 Sobic006G174850 Sobic010G275400--Sobic006G174850 Sobic004G321100 Sobic004G321100 Sobic010G275400--Sobic004G321100 Sobic008G011000 Sobic008G011000 Sobic001G503900--Sobic008G011000 Sobic003G156500 Sobic003G156500 Sobic001G503900--Sobic003G156500 Sobic002G316600 Sobic002G316600 Sobic001G503900--Sobic002G316600 Sobic003G260400 Sobic003G260400 Sobic001G503900--Sobic003G260400 Sobic001G503900--Sobic008G185800 Sobic010G169600 Sobic010G169600 Sobic001G503900--Sobic010G169600 Sobic001G503900--Sobic006G184900 Sobic010G136200 Sobic010G136200 Sobic001G503900--Sobic010G136200 Sobic002G388500 Sobic002G388500 Sobic001G503900--Sobic002G388500 Sobic010G169900--Sobic001G308400 Sobic002G079000 Sobic002G079000 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic002G355800 Sobic002G355800 Sobic010G169900--Sobic002G355800 Sobic010G169900--Sobic002G227500 Sobic006G128100 Sobic006G128100 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic001G389200 Sobic001G389200 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900
Octagon: transcription factors


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