Gene annotation
Transcriptome id Sobic.002G365900.1
Synonym Sb02g038500
Functional annotation WD repeat-containing protein 12, putative, expressed
UniProt C5XD79
Pfam PF08154 PF00400
Panther DB PTHR19855
NCBI CDD KOG0313; Microtubule binding protein YTM1 (contains WD40 repeats)
KEGG Orthology K14863; WDR12, ribosome biogenesis protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G15550 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g40930.1 : WD repeat-containing protein 12, putative, expressed
MaizeGDB (Corn) Zm00025a048679
Brachypodium KQK15376
Barley HORVU2Hr1G033510.1 , HORVU2Hr1G033450.11 , HORVU2Hr1G033450.10 , HORVU2Hr1G033450.13 , HORVU2Hr1G033450.12 , HORVU2Hr1G033450.14 , HORVU2Hr1G033450.9 , HORVU2Hr1G033450.8 , HORVU2Hr1G033450.5 , HORVU2Hr1G033450.4 , HORVU2Hr1G033450.7 , HORVU2Hr1G033450.6 , HORVU2Hr1G033450.1 , HORVU2Hr1G033450.3 , HORVU2Hr1G033450.2
Wheat TraesCS2A02G177700 , TraesCS2B02G204800 , TraesCS2D02G185900
Populus -


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cDNA sequences
Sobic.002G365900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
2 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
3 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
4 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
5 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
7 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
8 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
9 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
10 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
11 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
12 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
13 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
14 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
15 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
16 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
17 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
18 Sobic.006G225400 zinc finger protein, putative, expressed -
19 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
20 Sobic.009G102900 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1


Gene co-expression network
sample Sobic002G365900 Sobic002G365900 Sobic006G251600 Sobic006G251600 Sobic002G365900--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic002G365900--Sobic003G008600 Sobic001G008500 Sobic001G008500 Sobic002G365900--Sobic001G008500 Sobic002G423500 Sobic002G423500 Sobic002G365900--Sobic002G423500 Sobic009G071700 Sobic009G071700 Sobic002G365900--Sobic009G071700 Sobic004G252000 Sobic004G252000 Sobic002G365900--Sobic004G252000 Sobic001G488100 Sobic001G488100 Sobic002G365900--Sobic001G488100 Sobic010G205900 Sobic010G205900 Sobic002G365900--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic002G365900--Sobic004G173100 Sobic006G251600--Sobic009G071700 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic003G008600--Sobic001G008500 Sobic001G115500 Sobic001G115500 Sobic003G008600--Sobic001G115500 Sobic003G008600--Sobic002G423500 Sobic003G008600--Sobic002G365900 Sobic002G208400 Sobic002G208400 Sobic003G008600--Sobic002G208400 Sobic004G215700 Sobic004G215700 Sobic003G008600--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic003G008600--Sobic001G460500 Sobic004G075200 Sobic004G075200 Sobic003G008600--Sobic004G075200 Sobic003G130000 Sobic003G130000 Sobic003G008600--Sobic003G130000 Sobic004G047200 Sobic004G047200 Sobic001G008500--Sobic004G047200 Sobic001G008500--Sobic006G251600 Sobic001G008500--Sobic003G008600 Sobic001G008500--Sobic001G115500 Sobic001G008500--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic001G008500--Sobic002G423500 Sobic001G008500--Sobic001G371100 Sobic005G163700 Sobic005G163700 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic002G423500--Sobic002G014400 Sobic002G423500--Sobic001G460500 Sobic004G326600 Sobic004G326600 Sobic002G423500--Sobic004G326600 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic009G071700--Sobic006G198600 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic004G252000--Sobic002G423500 Sobic004G252000--Sobic004G326600 Sobic004G252000--Sobic002G014400 Sobic009G235000 Sobic009G235000 Sobic004G252000--Sobic009G235000 Sobic009G258500 Sobic009G258500 Sobic004G252000--Sobic009G258500 Sobic004G252000--Sobic002G365900 Sobic004G252000--Sobic004G047200 Sobic006G135900 Sobic006G135900 Sobic004G252000--Sobic006G135900 Sobic006G084000 Sobic006G084000 Sobic004G252000--Sobic006G084000 Sobic004G315500 Sobic004G315500 Sobic001G488100--Sobic004G315500 Sobic006G137700 Sobic006G137700 Sobic001G488100--Sobic006G137700 Sobic002G405500 Sobic002G405500 Sobic001G488100--Sobic002G405500 Sobic009G234700 Sobic009G234700 Sobic001G488100--Sobic009G234700 Sobic001G488100--Sobic010G188000 Sobic006G002800 Sobic006G002800 Sobic001G488100--Sobic006G002800 Sobic001G373000 Sobic001G373000 Sobic001G488100--Sobic001G373000 Sobic009G134900 Sobic009G134900 Sobic001G488100--Sobic009G134900 Sobic008G160000 Sobic008G160000 Sobic001G488100--Sobic008G160000 Sobic008G049100 Sobic008G049100 Sobic010G205900--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic010G205900--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic010G205900--Sobic009G246500 Sobic005G028100 Sobic005G028100 Sobic010G205900--Sobic005G028100 Sobic002G071400 Sobic002G071400 Sobic010G205900--Sobic002G071400 Sobic005G098800 Sobic005G098800 Sobic010G205900--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic010G205900--Sobic008G163500 Sobic003G199300 Sobic003G199300 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic004G173100--Sobic009G071700 Sobic004G173100--Sobic006G251600 Sobic004G173100--Sobic003G425100 Sobic002G262100 Sobic002G262100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic002G399200 Sobic002G399200 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic004G173100--Sobic005G100900 Sobic004G173100--Sobic008G163500
Octagon: transcription factors


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