Gene annotation
Transcriptome id Sobic.004G252000.2,Sobic.004G252000.1
Synonym Sb04g029150
Functional annotation expressed protein
UniProt A0A194YRH4 , C5XZE4
Pfam PF12923
Panther DB PTHR13191
NCBI CDD -
KEGG Orthology K14545; ribosomal RNA-processing protein 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G38720 : -
RAP-DB (Rice) LOC_Os02g49620.1 : expressed protein
MaizeGDB (Corn) Zm00025a021893 , Zm00025a038892
Brachypodium -
Barley HORVU6Hr1G072640.7 , HORVU6Hr1G072640.6 , HORVU6Hr1G072640.5 , HORVU6Hr1G072640.4 , HORVU6Hr1G072640.3 , HORVU6Hr1G072640.2 , HORVU6Hr1G072640.1
Wheat TraesCS6D02G269200 , TraesCS6D02G269200 , TraesCS6D02G269200 , TraesCS6A02G289700 , TraesCS6A02G289700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
2 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
3 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
4 Sobic.009G235000 WD domain, G-beta repeat domain containing protein, expressed K14829: pre-rRNA-processing protein IPI3
5 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
6 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
7 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
8 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
9 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
10 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
12 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
13 Sobic.006G269900 bystin, putative, expressed K14797: ENP1, essential nuclear protein 1
14 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
15 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
16 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
17 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
18 Sobic.005G090900 phosphoribosylamine--glycine ligase, putative, expressed K01945: phosphoribosylamine---glycine ligase
19 Sobic.004G272400 AAA-type ATPase family protein, putative, expressed K17681: ATPase family AAA domain-containing protein 3A/B
20 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3


Gene co-expression network
sample Sobic004G252000 Sobic004G252000 Sobic002G423500 Sobic002G423500 Sobic004G252000--Sobic002G423500 Sobic004G326600 Sobic004G326600 Sobic004G252000--Sobic004G326600 Sobic002G014400 Sobic002G014400 Sobic004G252000--Sobic002G014400 Sobic009G235000 Sobic009G235000 Sobic004G252000--Sobic009G235000 Sobic009G258500 Sobic009G258500 Sobic004G252000--Sobic009G258500 Sobic002G365900 Sobic002G365900 Sobic004G252000--Sobic002G365900 Sobic004G047200 Sobic004G047200 Sobic004G252000--Sobic004G047200 Sobic006G135900 Sobic006G135900 Sobic004G252000--Sobic006G135900 Sobic006G084000 Sobic006G084000 Sobic004G252000--Sobic006G084000 Sobic005G163700 Sobic005G163700 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G423500--Sobic002G014400 Sobic001G460500 Sobic001G460500 Sobic002G423500--Sobic001G460500 Sobic002G423500--Sobic004G326600 Sobic004G215700 Sobic004G215700 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic004G326600--Sobic004G047200 Sobic004G326600--Sobic002G014400 Sobic004G326600--Sobic002G423500 Sobic001G091900 Sobic001G091900 Sobic004G326600--Sobic001G091900 Sobic004G326600--Sobic004G215700 Sobic002G341800 Sobic002G341800 Sobic004G326600--Sobic002G341800 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700 Sobic002G014400--Sobic004G047200 Sobic002G014400--Sobic004G326600 Sobic002G014400--Sobic002G423500 Sobic002G014400--Sobic005G163700 Sobic002G014400--Sobic002G341800 Sobic002G014400--Sobic001G460500 Sobic002G394600 Sobic002G394600 Sobic002G014400--Sobic002G394600 Sobic006G044600 Sobic006G044600 Sobic002G014400--Sobic006G044600 Sobic001G251600 Sobic001G251600 Sobic002G014400--Sobic001G251600 Sobic009G235000--Sobic004G252000 Sobic001G007800 Sobic001G007800 Sobic009G235000--Sobic001G007800 Sobic009G235000--Sobic006G135900 Sobic008G160000 Sobic008G160000 Sobic009G235000--Sobic008G160000 Sobic009G249800 Sobic009G249800 Sobic009G235000--Sobic009G249800 Sobic006G142400 Sobic006G142400 Sobic009G235000--Sobic006G142400 Sobic001G017700 Sobic001G017700 Sobic009G235000--Sobic001G017700 Sobic009G235000--Sobic002G423500 Sobic009G235000--Sobic001G251600 Sobic001G382200 Sobic001G382200 Sobic009G258500--Sobic001G382200 Sobic004G010700 Sobic004G010700 Sobic009G258500--Sobic004G010700 Sobic009G201800 Sobic009G201800 Sobic009G258500--Sobic009G201800 Sobic003G198300 Sobic003G198300 Sobic009G258500--Sobic003G198300 Sobic006G226500 Sobic006G226500 Sobic009G258500--Sobic006G226500 Sobic009G258500--Sobic004G252000 Sobic009G258500--Sobic004G047200 Sobic008G016100 Sobic008G016100 Sobic009G258500--Sobic008G016100 Sobic004G249300 Sobic004G249300 Sobic009G258500--Sobic004G249300 Sobic006G251600 Sobic006G251600 Sobic002G365900--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic002G365900--Sobic003G008600 Sobic001G008500 Sobic001G008500 Sobic002G365900--Sobic001G008500 Sobic002G365900--Sobic002G423500 Sobic009G071700 Sobic009G071700 Sobic002G365900--Sobic009G071700 Sobic002G365900--Sobic004G252000 Sobic001G488100 Sobic001G488100 Sobic002G365900--Sobic001G488100 Sobic010G205900 Sobic010G205900 Sobic002G365900--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic002G365900--Sobic004G173100 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic004G047200--Sobic002G014400 Sobic004G047200--Sobic001G008500 Sobic004G047200--Sobic005G163700 Sobic001G530800 Sobic001G530800 Sobic004G047200--Sobic001G530800 Sobic004G047200--Sobic004G215700 Sobic004G047200--Sobic001G460500 Sobic001G371100 Sobic001G371100 Sobic004G047200--Sobic001G371100 Sobic006G135900--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic006G135900--Sobic001G455800 Sobic006G235700 Sobic006G235700 Sobic006G135900--Sobic006G235700 Sobic001G524400 Sobic001G524400 Sobic006G135900--Sobic001G524400 Sobic009G138700 Sobic009G138700 Sobic006G135900--Sobic009G138700 Sobic007G184500 Sobic007G184500 Sobic006G135900--Sobic007G184500 Sobic006G135900--Sobic009G235000 Sobic008G103300 Sobic008G103300 Sobic006G135900--Sobic008G103300 Sobic006G135900--Sobic008G016100 Sobic006G269900 Sobic006G269900 Sobic006G084000--Sobic006G269900 Sobic006G084000--Sobic008G160000 Sobic006G010400 Sobic006G010400 Sobic006G084000--Sobic006G010400 Sobic003G407600 Sobic003G407600 Sobic006G084000--Sobic003G407600 Sobic004G224600 Sobic004G224600 Sobic006G084000--Sobic004G224600 Sobic001G259000 Sobic001G259000 Sobic006G084000--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic006G084000--Sobic003G382500 Sobic010G247400 Sobic010G247400 Sobic006G084000--Sobic010G247400 Sobic009G246500 Sobic009G246500 Sobic006G084000--Sobic009G246500
Octagon: transcription factors


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