Gene annotation
Transcriptome id Sobic.005G090900.1
Synonym Sb05g007470
Functional annotation phosphoribosylamine--glycine ligase, putative, expressed
UniProt C5Y887
Pfam PF13535 PF02843 PF02844
Panther DB PTHR10520 PTHR10520:SF36
NCBI CDD -
KEGG Orthology K01945; phosphoribosylamine---glycine ligase
Gene Ontology GO:0009113; purine nucleobase biosynthetic process GO:0004637phosphoribosylamine-glycine ligase activity


Orthologs (automatic annotation)
TAIR AT1G09830 : Glycinamide ribonucleotide (GAR) synthetase
RAP-DB (Rice) LOC_Os08g09210.2 : phosphoribosylamine--glycine ligase, putative, expressed
MaizeGDB (Corn) Zm00025a044405 , Zm00025a036464
Brachypodium KQJ88867 , KQK04825 , KQK04822 , KQK04821 , PNT63859
Barley HORVU4Hr1G080000.2 , HORVU4Hr1G080000.1
Wheat TraesCS4D02G311700 , TraesCS4D02G311700 , TraesCS4A02G413900 , TraesCS4B02G314600 , TraesCS7B02G441300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
2 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
3 Sobic.009G235000 WD domain, G-beta repeat domain containing protein, expressed K14829: pre-rRNA-processing protein IPI3
4 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
5 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
6 Sobic.003G130600 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K11755: phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase
7 Sobic.001G432300 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed K01663: imidazole glycerol-phosphate synthase
8 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
9 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
10 Sobic.009G093200 superoxide dismutase, mitochondrial precursor, putative, expressed K04564: superoxide dismutase, Fe-Mn family
11 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
12 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
13 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
14 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
15 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
16 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
17 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
18 Sobic.010G073100 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
19 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
20 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7


Gene co-expression network
sample Sobic005G090900 Sobic005G090900 Sobic002G014400 Sobic002G014400 Sobic005G090900--Sobic002G014400 Sobic004G252000 Sobic004G252000 Sobic005G090900--Sobic004G252000 Sobic009G235000 Sobic009G235000 Sobic005G090900--Sobic009G235000 Sobic002G341800 Sobic002G341800 Sobic005G090900--Sobic002G341800 Sobic006G135900 Sobic006G135900 Sobic005G090900--Sobic006G135900 Sobic003G130600 Sobic003G130600 Sobic005G090900--Sobic003G130600 Sobic001G432300 Sobic001G432300 Sobic005G090900--Sobic001G432300 Sobic004G326600 Sobic004G326600 Sobic005G090900--Sobic004G326600 Sobic001G091900 Sobic001G091900 Sobic005G090900--Sobic001G091900 Sobic004G047200 Sobic004G047200 Sobic002G014400--Sobic004G047200 Sobic002G014400--Sobic004G326600 Sobic002G423500 Sobic002G423500 Sobic002G014400--Sobic002G423500 Sobic005G163700 Sobic005G163700 Sobic002G014400--Sobic005G163700 Sobic002G014400--Sobic002G341800 Sobic001G460500 Sobic001G460500 Sobic002G014400--Sobic001G460500 Sobic002G394600 Sobic002G394600 Sobic002G014400--Sobic002G394600 Sobic006G044600 Sobic006G044600 Sobic002G014400--Sobic006G044600 Sobic001G251600 Sobic001G251600 Sobic002G014400--Sobic001G251600 Sobic004G252000--Sobic002G423500 Sobic004G252000--Sobic004G326600 Sobic004G252000--Sobic002G014400 Sobic004G252000--Sobic009G235000 Sobic009G258500 Sobic009G258500 Sobic004G252000--Sobic009G258500 Sobic002G365900 Sobic002G365900 Sobic004G252000--Sobic002G365900 Sobic004G252000--Sobic004G047200 Sobic004G252000--Sobic006G135900 Sobic006G084000 Sobic006G084000 Sobic004G252000--Sobic006G084000 Sobic009G235000--Sobic004G252000 Sobic001G007800 Sobic001G007800 Sobic009G235000--Sobic001G007800 Sobic009G235000--Sobic006G135900 Sobic008G160000 Sobic008G160000 Sobic009G235000--Sobic008G160000 Sobic009G249800 Sobic009G249800 Sobic009G235000--Sobic009G249800 Sobic006G142400 Sobic006G142400 Sobic009G235000--Sobic006G142400 Sobic001G017700 Sobic001G017700 Sobic009G235000--Sobic001G017700 Sobic009G235000--Sobic002G423500 Sobic009G235000--Sobic001G251600 Sobic001G458700 Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic002G341800--Sobic006G044600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic006G135900--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic006G135900--Sobic001G455800 Sobic006G235700 Sobic006G235700 Sobic006G135900--Sobic006G235700 Sobic001G524400 Sobic001G524400 Sobic006G135900--Sobic001G524400 Sobic009G138700 Sobic009G138700 Sobic006G135900--Sobic009G138700 Sobic007G184500 Sobic007G184500 Sobic006G135900--Sobic007G184500 Sobic006G135900--Sobic009G235000 Sobic008G103300 Sobic008G103300 Sobic006G135900--Sobic008G103300 Sobic008G016100 Sobic008G016100 Sobic006G135900--Sobic008G016100 Sobic003G130600--Sobic001G432300 Sobic010G008100 Sobic010G008100 Sobic003G130600--Sobic010G008100 Sobic006G203100 Sobic006G203100 Sobic003G130600--Sobic006G203100 Sobic003G424800 Sobic003G424800 Sobic003G130600--Sobic003G424800 Sobic001G096100 Sobic001G096100 Sobic003G130600--Sobic001G096100 Sobic001G010700 Sobic001G010700 Sobic003G130600--Sobic001G010700 Sobic010G073100 Sobic010G073100 Sobic003G130600--Sobic010G073100 Sobic003G186700 Sobic003G186700 Sobic003G130600--Sobic003G186700 Sobic003G130600--Sobic002G341800 Sobic008G083400 Sobic008G083400 Sobic001G432300--Sobic008G083400 Sobic001G432300--Sobic003G130600 Sobic004G249300 Sobic004G249300 Sobic001G432300--Sobic004G249300 Sobic001G242800 Sobic001G242800 Sobic001G432300--Sobic001G242800 Sobic008G156300 Sobic008G156300 Sobic001G432300--Sobic008G156300 Sobic001G432300--Sobic004G326600 Sobic002G392800 Sobic002G392800 Sobic001G432300--Sobic002G392800 Sobic001G228200 Sobic001G228200 Sobic001G432300--Sobic001G228200 Sobic008G191500 Sobic008G191500 Sobic001G432300--Sobic008G191500 Sobic004G326600--Sobic004G047200 Sobic004G326600--Sobic002G014400 Sobic004G326600--Sobic002G423500 Sobic004G326600--Sobic001G091900 Sobic004G215700 Sobic004G215700 Sobic004G326600--Sobic004G215700 Sobic004G326600--Sobic002G341800 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic004G326600--Sobic001G458700 Sobic001G091900--Sobic004G326600 Sobic003G160900 Sobic003G160900 Sobic001G091900--Sobic003G160900 Sobic009G190300 Sobic009G190300 Sobic001G091900--Sobic009G190300 Sobic006G056600 Sobic006G056600 Sobic001G091900--Sobic006G056600 Sobic001G091900--Sobic001G481700 Sobic009G211700 Sobic009G211700 Sobic001G091900--Sobic009G211700 Sobic001G091900--Sobic002G341800 Sobic001G091900--Sobic002G143000 Sobic001G091900--Sobic001G458700
Octagon: transcription factors


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