Gene annotation
Transcriptome id Sobic.001G432300.1
Synonym HISN4, Sb01g040670, AT-HF
Functional annotation imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
UniProt C5WQU1
Pfam PF00117 PF00977
Panther DB PTHR21235 PTHR21235:SF2
NCBI CDD -
KEGG Orthology K01663; imidazole glycerol-phosphate synthase
Gene Ontology GO:0000105; histidine biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G26900 : HIS HF
RAP-DB (Rice) LOC_Os03g15120.1 : imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK22507
Barley HORVU4Hr1G062310.6 , HORVU4Hr1G062310.7 , HORVU4Hr1G062310.4 , HORVU4Hr1G062310.5 , HORVU4Hr1G062310.2 , HORVU4Hr1G062310.3 , HORVU4Hr1G062310.1 , HORVU4Hr1G062310.8
Wheat TraesCS4B02G219800 , TraesCS4B02G219800 , TraesCS4D02G220200 , TraesCS4D02G220200 , TraesCS4A02G084400 , TraesCS4A02G084400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
2 Sobic.003G130600 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K11755: phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase
3 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
4 Sobic.001G242800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.008G156300 kinase, pfkB family, putative, expressed K00868: pdxK, pyridoxine kinase
6 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
7 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
8 Sobic.001G228200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
9 Sobic.008G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -
10 Sobic.009G105900 amino acid permease family protein, putative, expressed K14427: SLC12A4_6, solute carrier family 12 (potassium/chloride transporter), member 4/6
11 Sobic.006G203100 expressed protein -
12 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
13 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
14 Sobic.002G194800 expressed protein -
15 Sobic.001G112700 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II
16 Sobic.001G168600 serpin domain containing protein, putative, expressed K13963: serpin B
17 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
18 Sobic.009G081500 per1-like family protein, putative, expressed -
19 Sobic.003G307900 BSD domain containing protein, expressed -
20 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2


Gene co-expression network
sample Sobic001G432300 Sobic001G432300 Sobic008G083400 Sobic008G083400 Sobic001G432300--Sobic008G083400 Sobic003G130600 Sobic003G130600 Sobic001G432300--Sobic003G130600 Sobic004G249300 Sobic004G249300 Sobic001G432300--Sobic004G249300 Sobic001G242800 Sobic001G242800 Sobic001G432300--Sobic001G242800 Sobic008G156300 Sobic008G156300 Sobic001G432300--Sobic008G156300 Sobic004G326600 Sobic004G326600 Sobic001G432300--Sobic004G326600 Sobic002G392800 Sobic002G392800 Sobic001G432300--Sobic002G392800 Sobic001G228200 Sobic001G228200 Sobic001G432300--Sobic001G228200 Sobic008G191500 Sobic008G191500 Sobic001G432300--Sobic008G191500 Sobic006G251600 Sobic006G251600 Sobic008G083400--Sobic006G251600 Sobic008G083400--Sobic001G432300 Sobic001G371100 Sobic001G371100 Sobic008G083400--Sobic001G371100 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic007G171200 Sobic007G171200 Sobic008G083400--Sobic007G171200 Sobic001G008500 Sobic001G008500 Sobic008G083400--Sobic001G008500 Sobic003G407800 Sobic003G407800 Sobic008G083400--Sobic003G407800 Sobic003G130600--Sobic001G432300 Sobic010G008100 Sobic010G008100 Sobic003G130600--Sobic010G008100 Sobic006G203100 Sobic006G203100 Sobic003G130600--Sobic006G203100 Sobic003G424800 Sobic003G424800 Sobic003G130600--Sobic003G424800 Sobic001G096100 Sobic001G096100 Sobic003G130600--Sobic001G096100 Sobic001G010700 Sobic001G010700 Sobic003G130600--Sobic001G010700 Sobic010G073100 Sobic010G073100 Sobic003G130600--Sobic010G073100 Sobic003G186700 Sobic003G186700 Sobic003G130600--Sobic003G186700 Sobic002G341800 Sobic002G341800 Sobic003G130600--Sobic002G341800 Sobic004G249300--Sobic002G341800 Sobic009G201800 Sobic009G201800 Sobic004G249300--Sobic009G201800 Sobic001G115500 Sobic001G115500 Sobic004G249300--Sobic001G115500 Sobic002G077900 Sobic002G077900 Sobic004G249300--Sobic002G077900 Sobic004G249300--Sobic008G083400 Sobic010G247400 Sobic010G247400 Sobic004G249300--Sobic010G247400 Sobic003G118400 Sobic003G118400 Sobic004G249300--Sobic003G118400 Sobic009G102900 Sobic009G102900 Sobic004G249300--Sobic009G102900 Sobic001G370300 Sobic001G370300 Sobic004G249300--Sobic001G370300 Sobic001G242800--Sobic002G392800 Sobic002G319200 Sobic002G319200 Sobic001G242800--Sobic002G319200 Sobic004G152200 Sobic004G152200 Sobic001G242800--Sobic004G152200 Sobic008G004100 Sobic008G004100 Sobic001G242800--Sobic008G004100 Sobic001G112700 Sobic001G112700 Sobic001G242800--Sobic001G112700 Sobic009G126500 Sobic009G126500 Sobic001G242800--Sobic009G126500 Sobic001G242800--Sobic001G432300 Sobic009G151700 Sobic009G151700 Sobic001G242800--Sobic009G151700 Sobic006G177300 Sobic006G177300 Sobic001G242800--Sobic006G177300 Sobic007G120800 Sobic007G120800 Sobic008G156300--Sobic007G120800 Sobic008G156300--Sobic006G203100 Sobic008G156300--Sobic001G432300 Sobic010G274500 Sobic010G274500 Sobic008G156300--Sobic010G274500 Sobic005G229166 Sobic005G229166 Sobic008G156300--Sobic005G229166 Sobic010G050200 Sobic010G050200 Sobic008G156300--Sobic010G050200 Sobic002G114800 Sobic002G114800 Sobic008G156300--Sobic002G114800 Sobic002G306700 Sobic002G306700 Sobic008G156300--Sobic002G306700 Sobic001G540100 Sobic001G540100 Sobic008G156300--Sobic001G540100 Sobic004G047200 Sobic004G047200 Sobic004G326600--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic004G326600--Sobic002G014400 Sobic002G423500 Sobic002G423500 Sobic004G326600--Sobic002G423500 Sobic001G091900 Sobic001G091900 Sobic004G326600--Sobic001G091900 Sobic004G215700 Sobic004G215700 Sobic004G326600--Sobic004G215700 Sobic004G326600--Sobic002G341800 Sobic005G163700 Sobic005G163700 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700 Sobic002G392800--Sobic001G242800 Sobic002G392800--Sobic001G112700 Sobic002G392800--Sobic008G004100 Sobic003G160900 Sobic003G160900 Sobic002G392800--Sobic003G160900 Sobic010G080500 Sobic010G080500 Sobic002G392800--Sobic010G080500 Sobic006G002700 Sobic006G002700 Sobic002G392800--Sobic006G002700 Sobic009G238900 Sobic009G238900 Sobic002G392800--Sobic009G238900 Sobic009G117000 Sobic009G117000 Sobic002G392800--Sobic009G117000 Sobic008G132700 Sobic008G132700 Sobic002G392800--Sobic008G132700 Sobic008G168100 Sobic008G168100 Sobic001G228200--Sobic008G168100 Sobic009G059500 Sobic009G059500 Sobic001G228200--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic001G228200--Sobic002G186900 Sobic001G228200--Sobic001G371100 Sobic003G146800 Sobic003G146800 Sobic001G228200--Sobic003G146800 Sobic001G397000 Sobic001G397000 Sobic001G228200--Sobic001G397000 Sobic007G113300 Sobic007G113300 Sobic001G228200--Sobic007G113300 Sobic002G280700 Sobic002G280700 Sobic001G228200--Sobic002G280700 Sobic001G228200--Sobic004G326600 Sobic010G090500 Sobic010G090500 Sobic008G191500--Sobic010G090500 Sobic001G159800 Sobic001G159800 Sobic008G191500--Sobic001G159800 Sobic009G206500 Sobic009G206500 Sobic008G191500--Sobic009G206500 Sobic003G017500 Sobic003G017500 Sobic008G191500--Sobic003G017500 Sobic008G191500--Sobic009G151700 Sobic004G051300 Sobic004G051300 Sobic008G191500--Sobic004G051300 Sobic001G073150 Sobic001G073150 Sobic008G191500--Sobic001G073150 Sobic009G073400 Sobic009G073400 Sobic008G191500--Sobic009G073400 Sobic009G061000 Sobic009G061000 Sobic008G191500--Sobic009G061000
Octagon: transcription factors


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