Gene annotation
Transcriptome id Sobic.006G135900.1
Synonym CDC48B, Sb06g021560
Functional annotation cell division control protein 48 homolog B, putative, expressed
UniProt A0A1B6PLU7
Pfam PF07728 PF00004
Panther DB PTHR23077 PTHR23077:SF54
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT2G03670 : cell division cycle 48B
RAP-DB (Rice) LOC_Os04g42110.1 : cell division control protein 48 homolog B, putative, expressed
MaizeGDB (Corn) Zm00025a056402
Brachypodium KQJ83384 , KQJ83385
Barley HORVU2Hr1G086170.10 , HORVU2Hr1G086170.11 , HORVU2Hr1G086170.12 , HORVU2Hr1G086170.13 , HORVU2Hr1G086170.14 , HORVU2Hr1G086170.15 , HORVU2Hr1G086170.16 , HORVU2Hr1G086170.17 , HORVU2Hr1G086170.19 , HORVU2Hr1G086170.30 , HORVU2Hr1G086170.25 , HORVU2Hr1G086170.24 , HORVU2Hr1G086170.27 , HORVU2Hr1G086170.26 , HORVU2Hr1G086170.23 , HORVU2Hr1G086170.22 , HORVU2Hr1G086170.29 , HORVU2Hr1G086170.28 , HORVU2Hr1G086170.21 , HORVU2Hr1G086170.18 , HORVU2Hr1G086170.20 , HORVU2Hr1G086170.38 , HORVU2Hr1G086170.39 , HORVU2Hr1G086170.32 , HORVU2Hr1G086170.33 , HORVU2Hr1G086170.31 , HORVU2Hr1G086170.36 , HORVU2Hr1G086170.37 , HORVU2Hr1G086170.34 , HORVU2Hr1G086170.35 , HORVU2Hr1G086170.3 , HORVU2Hr1G086170.1 , HORVU2Hr1G086170.2 , HORVU2Hr1G086170.6 , HORVU2Hr1G086170.7 , HORVU2Hr1G086170.4 , HORVU2Hr1G086170.5 , HORVU2Hr1G086170.8 , HORVU2Hr1G086170.9 , HORVU2Hr1G086170.47 , HORVU2Hr1G086170.46 , HORVU2Hr1G086170.45 , HORVU2Hr1G086170.44 , HORVU2Hr1G086170.43 , HORVU2Hr1G086170.42 , HORVU2Hr1G086170.41 , HORVU2Hr1G086170.40
Wheat TraesCS2B02G373100 , TraesCS2B02G373100 , TraesCS2D02G353100 , TraesCS2A02G355200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
3 Sobic.006G235700 programmed cell death 2 C-terminal domain-containing protein, putative, expressed K14801: pre-rRNA-processing protein TSR4
4 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
5 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
6 Sobic.007G184500 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
7 Sobic.009G235000 WD domain, G-beta repeat domain containing protein, expressed K14829: pre-rRNA-processing protein IPI3
8 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
9 Sobic.008G016100 WD domain, G-beta repeat domain containing protein, expressed K14848: RRB1, ribosome assembly protein RRB1
10 Sobic.010G228500 rab geranylgeranyl transferase like protein, putative, expressed K14050: geranylgeranyl transferase type-2 subunit alpha
11 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
12 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
13 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
14 Sobic.001G103900 signal peptide peptidase domain containing protein, expressed -
15 Sobic.009G016400 RNA recognition motif containing protein, expressed -
16 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
17 Sobic.001G447300 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
18 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
19 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
20 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9


Gene co-expression network
sample Sobic006G135900 Sobic006G135900 Sobic008G160000 Sobic008G160000 Sobic006G135900--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic006G135900--Sobic001G455800 Sobic006G235700 Sobic006G235700 Sobic006G135900--Sobic006G235700 Sobic001G524400 Sobic001G524400 Sobic006G135900--Sobic001G524400 Sobic009G138700 Sobic009G138700 Sobic006G135900--Sobic009G138700 Sobic007G184500 Sobic007G184500 Sobic006G135900--Sobic007G184500 Sobic009G235000 Sobic009G235000 Sobic006G135900--Sobic009G235000 Sobic008G103300 Sobic008G103300 Sobic006G135900--Sobic008G103300 Sobic008G016100 Sobic008G016100 Sobic006G135900--Sobic008G016100 Sobic004G340400 Sobic004G340400 Sobic008G160000--Sobic004G340400 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic008G160000--Sobic009G138700 Sobic002G150700 Sobic002G150700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic001G145400 Sobic001G145400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic001G455800--Sobic009G016400 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G447300 Sobic001G447300 Sobic001G455800--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic001G455800--Sobic002G142900 Sobic001G455800--Sobic008G160000 Sobic001G455800--Sobic001G145400 Sobic006G235700--Sobic006G135900 Sobic006G235700--Sobic009G138700 Sobic001G017700 Sobic001G017700 Sobic006G235700--Sobic001G017700 Sobic003G287100 Sobic003G287100 Sobic006G235700--Sobic003G287100 Sobic006G200700 Sobic006G200700 Sobic006G235700--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic006G235700--Sobic009G143800 Sobic006G235700--Sobic007G184500 Sobic003G382500 Sobic003G382500 Sobic006G235700--Sobic003G382500 Sobic003G279900 Sobic003G279900 Sobic006G235700--Sobic003G279900 Sobic004G307500 Sobic004G307500 Sobic001G524400--Sobic004G307500 Sobic010G203300 Sobic010G203300 Sobic001G524400--Sobic010G203300 Sobic001G524400--Sobic006G135900 Sobic007G039400 Sobic007G039400 Sobic001G524400--Sobic007G039400 Sobic003G300300 Sobic003G300300 Sobic001G524400--Sobic003G300300 Sobic001G524400--Sobic008G103300 Sobic003G188500 Sobic003G188500 Sobic001G524400--Sobic003G188500 Sobic001G524400--Sobic009G138700 Sobic004G346100 Sobic004G346100 Sobic001G524400--Sobic004G346100 Sobic009G138700--Sobic007G039400 Sobic009G138700--Sobic008G160000 Sobic009G138700--Sobic001G259000 Sobic009G138700--Sobic003G382500 Sobic002G406600 Sobic002G406600 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic009G138700--Sobic006G235700 Sobic009G138700--Sobic006G135900 Sobic009G138700--Sobic009G143800 Sobic001G360200 Sobic001G360200 Sobic007G184500--Sobic001G360200 Sobic001G033500 Sobic001G033500 Sobic007G184500--Sobic001G033500 Sobic007G077400 Sobic007G077400 Sobic007G184500--Sobic007G077400 Sobic006G044600 Sobic006G044600 Sobic007G184500--Sobic006G044600 Sobic009G058500 Sobic009G058500 Sobic007G184500--Sobic009G058500 Sobic006G278700 Sobic006G278700 Sobic007G184500--Sobic006G278700 Sobic004G353000 Sobic004G353000 Sobic007G184500--Sobic004G353000 Sobic004G178200 Sobic004G178200 Sobic007G184500--Sobic004G178200 Sobic010G073100 Sobic010G073100 Sobic007G184500--Sobic010G073100 Sobic004G252000 Sobic004G252000 Sobic009G235000--Sobic004G252000 Sobic001G007800 Sobic001G007800 Sobic009G235000--Sobic001G007800 Sobic009G235000--Sobic006G135900 Sobic009G235000--Sobic008G160000 Sobic009G249800 Sobic009G249800 Sobic009G235000--Sobic009G249800 Sobic006G142400 Sobic006G142400 Sobic009G235000--Sobic006G142400 Sobic009G235000--Sobic001G017700 Sobic002G423500 Sobic002G423500 Sobic009G235000--Sobic002G423500 Sobic001G251600 Sobic001G251600 Sobic009G235000--Sobic001G251600 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic008G103300--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic008G103300--Sobic003G046300 Sobic003G132000 Sobic003G132000 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic008G103300--Sobic001G145400 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic003G408300 Sobic003G408300 Sobic008G016100--Sobic003G408300 Sobic002G116500 Sobic002G116500 Sobic008G016100--Sobic002G116500 Sobic001G382200 Sobic001G382200 Sobic008G016100--Sobic001G382200 Sobic008G016100--Sobic006G135900 Sobic009G258500 Sobic009G258500 Sobic008G016100--Sobic009G258500 Sobic001G193500 Sobic001G193500 Sobic008G016100--Sobic001G193500 Sobic001G471000 Sobic001G471000 Sobic008G016100--Sobic001G471000 Sobic009G219400 Sobic009G219400 Sobic008G016100--Sobic009G219400 Sobic008G016100--Sobic001G007800
Octagon: transcription factors


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