Gene annotation
Transcriptome id Sobic.009G016400.1
Synonym PHIP1, Sb09g001570
Functional annotation RNA recognition motif containing protein, expressed
UniProt A0A1Z5R0E0
Pfam PF14392 PF00076 PF00098
Panther DB PTHR24012 PTHR24012:SF386
NCBI CDD KOG4400; E3 ubiquitin ligase interacting with arginine methyltransferase
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G55340 : phragmoplastin interacting protein 1
RAP-DB (Rice) LOC_Os05g02400.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a040889
Brachypodium KQK07745
Barley -
Wheat TraesCS1A02G040400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
2 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
3 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
4 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
5 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
6 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
7 Sobic.004G145000 importin-8, putative, expressed -
8 Sobic.009G046100 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
9 Sobic.001G401500 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
10 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
11 Sobic.009G201700 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
12 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
13 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
14 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
15 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
16 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
17 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
18 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
19 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
20 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3


Gene co-expression network
sample Sobic009G016400 Sobic009G016400 Sobic001G455800 Sobic001G455800 Sobic009G016400--Sobic001G455800 Sobic004G340400 Sobic004G340400 Sobic009G016400--Sobic004G340400 Sobic008G160000 Sobic008G160000 Sobic009G016400--Sobic008G160000 Sobic004G320500 Sobic004G320500 Sobic009G016400--Sobic004G320500 Sobic001G052400 Sobic001G052400 Sobic009G016400--Sobic001G052400 Sobic002G256700 Sobic002G256700 Sobic009G016400--Sobic002G256700 Sobic004G145000 Sobic004G145000 Sobic009G016400--Sobic004G145000 Sobic009G046100 Sobic009G046100 Sobic009G016400--Sobic009G046100 Sobic001G401500 Sobic001G401500 Sobic009G016400--Sobic001G401500 Sobic001G455800--Sobic009G016400 Sobic002G150700 Sobic002G150700 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G447300 Sobic001G447300 Sobic001G455800--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic001G455800--Sobic002G142900 Sobic001G455800--Sobic008G160000 Sobic001G145400 Sobic001G145400 Sobic001G455800--Sobic001G145400 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic004G340400--Sobic008G160000 Sobic004G340400--Sobic001G052400 Sobic004G340400--Sobic001G455800 Sobic004G340400--Sobic004G145000 Sobic004G340400--Sobic001G401500 Sobic008G160000--Sobic004G340400 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic008G160000--Sobic002G150700 Sobic008G160000--Sobic009G016400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic004G320500--Sobic001G052400 Sobic006G086600 Sobic006G086600 Sobic004G320500--Sobic006G086600 Sobic004G320500--Sobic004G340400 Sobic004G320500--Sobic002G256700 Sobic001G493700 Sobic001G493700 Sobic004G320500--Sobic001G493700 Sobic001G089600 Sobic001G089600 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic010G003400 Sobic010G003400 Sobic004G320500--Sobic010G003400 Sobic009G255600 Sobic009G255600 Sobic004G320500--Sobic009G255600 Sobic001G052400--Sobic004G320500 Sobic001G052400--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic003G042400 Sobic003G042400 Sobic001G052400--Sobic003G042400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic006G125900 Sobic006G125900 Sobic001G052400--Sobic006G125900 Sobic003G104000 Sobic003G104000 Sobic002G256700--Sobic003G104000 Sobic002G256700--Sobic001G493700 Sobic007G054800 Sobic007G054800 Sobic002G256700--Sobic007G054800 Sobic001G251100 Sobic001G251100 Sobic002G256700--Sobic001G251100 Sobic002G256700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G256700--Sobic004G131300 Sobic006G280000 Sobic006G280000 Sobic002G256700--Sobic006G280000 Sobic002G133300 Sobic002G133300 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200 Sobic006G139100 Sobic006G139100 Sobic004G145000--Sobic006G139100 Sobic004G145000--Sobic004G340400 Sobic006G034500 Sobic006G034500 Sobic004G145000--Sobic006G034500 Sobic004G145000--Sobic001G447300 Sobic004G145000--Sobic001G455800 Sobic004G145000--Sobic002G256700 Sobic003G036400 Sobic003G036400 Sobic004G145000--Sobic003G036400 Sobic004G145000--Sobic003G104000 Sobic006G166200 Sobic006G166200 Sobic004G145000--Sobic006G166200 Sobic009G046100--Sobic001G455800 Sobic001G407700 Sobic001G407700 Sobic009G046100--Sobic001G407700 Sobic010G206300 Sobic010G206300 Sobic009G046100--Sobic010G206300 Sobic008G082500 Sobic008G082500 Sobic009G046100--Sobic008G082500 Sobic001G244300 Sobic001G244300 Sobic009G046100--Sobic001G244300 Sobic009G046100--Sobic009G016400 Sobic008G070800 Sobic008G070800 Sobic009G046100--Sobic008G070800 Sobic009G046100--Sobic007G054800 Sobic001G058200 Sobic001G058200 Sobic009G046100--Sobic001G058200 Sobic001G401500--Sobic004G340400 Sobic001G401500--Sobic001G259000 Sobic001G401500--Sobic010G007100 Sobic009G211200 Sobic009G211200 Sobic001G401500--Sobic009G211200 Sobic001G401500--Sobic001G244300 Sobic006G193300 Sobic006G193300 Sobic001G401500--Sobic006G193300 Sobic009G101200 Sobic009G101200 Sobic001G401500--Sobic009G101200 Sobic010G055700 Sobic010G055700 Sobic001G401500--Sobic010G055700 Sobic001G401500--Sobic006G086600
Octagon: transcription factors


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