Gene annotation
Transcriptome id Sobic.001G103900.2,Sobic.001G103900.1
Synonym Sb01g009280, ATSPP, SPP
Functional annotation signal peptide peptidase domain containing protein, expressed
UniProt A0A1B6QIA0
Pfam PF04258
Panther DB PTHR12174
NCBI CDD KOG2443; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT2G03120 : signal peptide peptidase
RAP-DB (Rice) LOC_Os05g36070.3 : signal peptide peptidase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018720 , Zm00025a035047
Brachypodium KQJ92920 , KQK24085 , KQJ92919
Barley HORVU3Hr1G108010.9 , HORVU3Hr1G108010.8 , HORVU3Hr1G108010.1 , HORVU3Hr1G108010.3 , HORVU3Hr1G108010.2 , HORVU3Hr1G108010.5 , HORVU3Hr1G108010.4 , HORVU3Hr1G108010.7 , HORVU3Hr1G108010.6 , HORVU3Hr1G108010.10
Wheat TraesCS3B02G545500 , TraesCS6B02G064500 , TraesCS6B02G064500 , TraesCS3D02G492200
Populus -


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cDNA sequences
Sobic.001G103900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
2 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
3 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
4 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3
5 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
6 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
7 Sobic.006G055300 RNA polymerase III RPC4 domain containing protein, expressed K03026: RPC4, DNA-directed RNA polymerase III subunit RPC4
8 Sobic.002G300700 peptidyl-prolyl cis-trans isomerase, putative, expressed -
9 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
10 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
11 Sobic.004G194900 expressed protein -
12 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
13 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
14 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
15 Sobic.005G155700 methyltransferase, putative, expressed -
16 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
17 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
18 Sobic.003G280300 STE_MEK_ste7_MAP2K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
19 Sobic.004G013100 signal peptide peptidase domain containing protein, expressed K09595: minor histocompatibility antigen H13
20 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3


Gene co-expression network
sample Sobic001G103900 Sobic001G103900 Sobic003G312200 Sobic003G312200 Sobic001G103900--Sobic003G312200 Sobic008G103300 Sobic008G103300 Sobic001G103900--Sobic008G103300 Sobic008G055900 Sobic008G055900 Sobic001G103900--Sobic008G055900 Sobic006G034500 Sobic006G034500 Sobic001G103900--Sobic006G034500 Sobic003G046300 Sobic003G046300 Sobic001G103900--Sobic003G046300 Sobic006G044600 Sobic006G044600 Sobic001G103900--Sobic006G044600 Sobic006G055300 Sobic006G055300 Sobic001G103900--Sobic006G055300 Sobic002G300700 Sobic002G300700 Sobic001G103900--Sobic002G300700 Sobic001G091300 Sobic001G091300 Sobic001G103900--Sobic001G091300 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic003G312200--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic009G228700 Sobic009G228700 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic001G085100 Sobic001G085100 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic008G103300--Sobic008G055900 Sobic002G371700 Sobic002G371700 Sobic008G103300--Sobic002G371700 Sobic008G103300--Sobic003G046300 Sobic003G132000 Sobic003G132000 Sobic008G103300--Sobic003G132000 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic002G020700 Sobic002G020700 Sobic008G055900--Sobic002G020700 Sobic010G223300 Sobic010G223300 Sobic008G055900--Sobic010G223300 Sobic008G055900--Sobic008G103300 Sobic010G020400 Sobic010G020400 Sobic008G055900--Sobic010G020400 Sobic006G136400 Sobic006G136400 Sobic008G055900--Sobic006G136400 Sobic001G447300 Sobic001G447300 Sobic008G055900--Sobic001G447300 Sobic008G085700 Sobic008G085700 Sobic008G055900--Sobic008G085700 Sobic006G056200 Sobic006G056200 Sobic008G055900--Sobic006G056200 Sobic008G129600 Sobic008G129600 Sobic008G055900--Sobic008G129600 Sobic004G145000 Sobic004G145000 Sobic006G034500--Sobic004G145000 Sobic001G440800 Sobic001G440800 Sobic006G034500--Sobic001G440800 Sobic003G104000 Sobic003G104000 Sobic006G034500--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic006G034500--Sobic002G256700 Sobic009G201700 Sobic009G201700 Sobic006G034500--Sobic009G201700 Sobic006G034500--Sobic008G055900 Sobic002G142900 Sobic002G142900 Sobic006G034500--Sobic002G142900 Sobic004G088501 Sobic004G088501 Sobic006G034500--Sobic004G088501 Sobic004G261600 Sobic004G261600 Sobic006G034500--Sobic004G261600 Sobic006G188500 Sobic006G188500 Sobic003G046300--Sobic006G188500 Sobic003G046300--Sobic008G103300 Sobic003G046300--Sobic002G142900 Sobic003G046300--Sobic002G371700 Sobic003G046300--Sobic003G132000 Sobic007G000200 Sobic007G000200 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic001G487100 Sobic001G487100 Sobic003G046300--Sobic001G487100 Sobic002G341800 Sobic002G341800 Sobic006G044600--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic006G044600--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic006G044600--Sobic002G394600 Sobic007G184500 Sobic007G184500 Sobic006G044600--Sobic007G184500 Sobic007G166400 Sobic007G166400 Sobic006G044600--Sobic007G166400 Sobic001G458700 Sobic001G458700 Sobic006G044600--Sobic001G458700 Sobic002G077900 Sobic002G077900 Sobic006G044600--Sobic002G077900 Sobic009G058500 Sobic009G058500 Sobic006G044600--Sobic009G058500 Sobic006G044600--Sobic008G055900 Sobic009G056200 Sobic009G056200 Sobic006G055300--Sobic009G056200 Sobic006G055300--Sobic001G455800 Sobic001G509500 Sobic001G509500 Sobic006G055300--Sobic001G509500 Sobic006G055300--Sobic001G103900 Sobic006G055300--Sobic002G142900 Sobic007G071900 Sobic007G071900 Sobic006G055300--Sobic007G071900 Sobic006G055300--Sobic006G200700 Sobic007G009700 Sobic007G009700 Sobic006G055300--Sobic007G009700 Sobic008G063300 Sobic008G063300 Sobic006G055300--Sobic008G063300 Sobic001G360200 Sobic001G360200 Sobic002G300700--Sobic001G360200 Sobic006G252700 Sobic006G252700 Sobic002G300700--Sobic006G252700 Sobic003G005200 Sobic003G005200 Sobic002G300700--Sobic003G005200 Sobic003G422900 Sobic003G422900 Sobic002G300700--Sobic003G422900 Sobic009G164000 Sobic009G164000 Sobic002G300700--Sobic009G164000 Sobic004G066200 Sobic004G066200 Sobic002G300700--Sobic004G066200 Sobic006G278700 Sobic006G278700 Sobic002G300700--Sobic006G278700 Sobic004G039600 Sobic004G039600 Sobic002G300700--Sobic004G039600 Sobic003G352200 Sobic003G352200 Sobic002G300700--Sobic003G352200 Sobic001G091300--Sobic009G228700 Sobic001G091300--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic001G091300--Sobic004G275700 Sobic001G091300--Sobic004G066200 Sobic001G091300--Sobic001G085100 Sobic001G512300 Sobic001G512300 Sobic001G091300--Sobic001G512300 Sobic001G091300--Sobic001G261436 Sobic001G199100 Sobic001G199100 Sobic001G091300--Sobic001G199100 Sobic002G303600 Sobic002G303600 Sobic001G091300--Sobic002G303600
Octagon: transcription factors


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