Gene annotation
Transcriptome id Sobic.002G300700.3,Sobic.002G300700.2,Sobic.002G300700.4,Sobic.002G300700.1
Synonym Sb02g033130
Functional annotation peptidyl-prolyl cis-trans isomerase, putative, expressed
UniProt A0A1B6QE56
Pfam PF00160
Panther DB PTHR11071 PTHR11071:SF200 PTHR11071:SF200 PTHR11071
NCBI CDD KOG0881; Cyclophilin type peptidyl-prolyl cis-trans isomerase
KEGG Orthology -
Gene Ontology GO:0000413; protein peptidyl-prolyl isomerization GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0006457protein folding GO:0006457protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT3G66654 : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
RAP-DB (Rice) LOC_Os07g29390.3,LOC_Os07g29390.2 : peptidyl-prolyl cis-trans isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a047829
Brachypodium KQK16293 , KQK16294
Barley HORVU2Hr1G054470.8 , HORVU2Hr1G054470.1 , HORVU2Hr1G054470.2 , HORVU2Hr1G054470.3 , HORVU2Hr1G054470.4 , HORVU2Hr1G054470.5 , HORVU2Hr1G054470.6 , HORVU2Hr1G054470.7
Wheat TraesCS2B02G255000 , TraesCS2D02G237600
Populus -


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cDNA sequences
Sobic.002G300700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
2 Sobic.006G252700 protein kinase domain containing protein, expressed -
3 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
4 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
5 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
6 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
7 Sobic.006G278700 expressed protein -
8 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
9 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
11 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
12 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
13 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
14 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
15 Sobic.001G382600 expressed protein -
16 Sobic.008G004400 GIL1, putative, expressed -
17 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
18 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
19 Sobic.009G228700 expressed protein -
20 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -


Gene co-expression network
sample Sobic002G300700 Sobic002G300700 Sobic001G360200 Sobic001G360200 Sobic002G300700--Sobic001G360200 Sobic006G252700 Sobic006G252700 Sobic002G300700--Sobic006G252700 Sobic003G005200 Sobic003G005200 Sobic002G300700--Sobic003G005200 Sobic003G422900 Sobic003G422900 Sobic002G300700--Sobic003G422900 Sobic009G164000 Sobic009G164000 Sobic002G300700--Sobic009G164000 Sobic004G066200 Sobic004G066200 Sobic002G300700--Sobic004G066200 Sobic006G278700 Sobic006G278700 Sobic002G300700--Sobic006G278700 Sobic004G039600 Sobic004G039600 Sobic002G300700--Sobic004G039600 Sobic003G352200 Sobic003G352200 Sobic002G300700--Sobic003G352200 Sobic001G360200--Sobic006G278700 Sobic001G360200--Sobic004G066200 Sobic007G184500 Sobic007G184500 Sobic001G360200--Sobic007G184500 Sobic001G360200--Sobic006G252700 Sobic001G360200--Sobic002G300700 Sobic001G143500 Sobic001G143500 Sobic001G360200--Sobic001G143500 Sobic009G058500 Sobic009G058500 Sobic001G360200--Sobic009G058500 Sobic009G228700 Sobic009G228700 Sobic001G360200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic001G360200--Sobic006G101700 Sobic003G081000 Sobic003G081000 Sobic006G252700--Sobic003G081000 Sobic001G466700 Sobic001G466700 Sobic006G252700--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic006G252700--Sobic004G350100 Sobic006G252700--Sobic001G143500 Sobic007G118200 Sobic007G118200 Sobic006G252700--Sobic007G118200 Sobic006G252700--Sobic006G278700 Sobic003G401100 Sobic003G401100 Sobic006G252700--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic006G252700--Sobic003G439800 Sobic002G034600 Sobic002G034600 Sobic006G252700--Sobic002G034600 Sobic003G005200--Sobic002G300700 Sobic009G160600 Sobic009G160600 Sobic003G005200--Sobic009G160600 Sobic003G005200--Sobic001G360200 Sobic006G225300 Sobic006G225300 Sobic003G005200--Sobic006G225300 Sobic002G281300 Sobic002G281300 Sobic003G005200--Sobic002G281300 Sobic004G091200 Sobic004G091200 Sobic003G005200--Sobic004G091200 Sobic003G038600 Sobic003G038600 Sobic003G005200--Sobic003G038600 Sobic003G021200 Sobic003G021200 Sobic003G005200--Sobic003G021200 Sobic003G005200--Sobic009G058500 Sobic010G020400 Sobic010G020400 Sobic003G422900--Sobic010G020400 Sobic003G155900 Sobic003G155900 Sobic003G422900--Sobic003G155900 Sobic002G303600 Sobic002G303600 Sobic003G422900--Sobic002G303600 Sobic003G422900--Sobic009G164000 Sobic009G044800 Sobic009G044800 Sobic003G422900--Sobic009G044800 Sobic001G392300 Sobic001G392300 Sobic003G422900--Sobic001G392300 Sobic004G257100 Sobic004G257100 Sobic003G422900--Sobic004G257100 Sobic002G256200 Sobic002G256200 Sobic003G422900--Sobic002G256200 Sobic008G082500 Sobic008G082500 Sobic003G422900--Sobic008G082500 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic009G164000--Sobic003G422900 Sobic002G371700 Sobic002G371700 Sobic009G164000--Sobic002G371700 Sobic001G114500 Sobic001G114500 Sobic009G164000--Sobic001G114500 Sobic003G132000 Sobic003G132000 Sobic009G164000--Sobic003G132000 Sobic008G103300 Sobic008G103300 Sobic009G164000--Sobic008G103300 Sobic004G353000 Sobic004G353000 Sobic009G164000--Sobic004G353000 Sobic009G164000--Sobic002G300700 Sobic001G249700 Sobic001G249700 Sobic009G164000--Sobic001G249700 Sobic001G356600 Sobic001G356600 Sobic004G066200--Sobic001G356600 Sobic004G066200--Sobic009G228700 Sobic004G066200--Sobic006G101700 Sobic001G080700 Sobic001G080700 Sobic004G066200--Sobic001G080700 Sobic004G066200--Sobic001G392300 Sobic004G066200--Sobic003G352200 Sobic003G248200 Sobic003G248200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic002G378200 Sobic002G378200 Sobic006G278700--Sobic002G378200 Sobic006G278700--Sobic006G252700 Sobic007G205000 Sobic007G205000 Sobic006G278700--Sobic007G205000 Sobic006G278700--Sobic001G360200 Sobic006G278700--Sobic003G401100 Sobic006G278700--Sobic001G143500 Sobic001G226000 Sobic001G226000 Sobic006G278700--Sobic001G226000 Sobic006G278700--Sobic007G118200 Sobic008G004400 Sobic008G004400 Sobic006G278700--Sobic008G004400 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic001G369000 Sobic001G369000 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic003G352200--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic003G352200--Sobic001G473600 Sobic003G352200--Sobic002G034600 Sobic004G274200 Sobic004G274200 Sobic003G352200--Sobic004G274200 Sobic003G352200--Sobic003G155900 Sobic003G352200--Sobic004G066200 Sobic002G045600 Sobic002G045600 Sobic003G352200--Sobic002G045600 Sobic001G109800 Sobic001G109800 Sobic003G352200--Sobic001G109800 Sobic001G088100 Sobic001G088100 Sobic003G352200--Sobic001G088100
Octagon: transcription factors


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