Gene annotation
Transcriptome id Sobic.002G242700.1
Synonym Sb02g027970
Functional annotation expressed protein
UniProt A0A1W0W5K7
Pfam PF09734
Panther DB PTHR13230
NCBI CDD KOG2473; RNA polymerase III transcription factor (TF)IIIC subunit
KEGG Orthology K15202; GTF3C5, general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49410 : Transcription factor IIIC, subunit 5
RAP-DB (Rice) LOC_Os01g34430.1 : expressed protein
MaizeGDB (Corn) Zm00025a055715
Brachypodium KQJ82009
Barley HORVU1Hr1G083660.8 , HORVU1Hr1G083660.9 , HORVU1Hr1G083660.3 , HORVU1Hr1G083660.6 , HORVU1Hr1G083660.7 , HORVU1Hr1G083660.4 , HORVU1Hr1G083660.28 , HORVU1Hr1G083660.25 , HORVU1Hr1G083660.24 , HORVU1Hr1G083660.27 , HORVU1Hr1G083660.26 , HORVU1Hr1G083660.21 , HORVU1Hr1G083660.20 , HORVU1Hr1G083660.23 , HORVU1Hr1G083660.22 , HORVU1Hr1G083660.32 , HORVU1Hr1G083660.33 , HORVU1Hr1G083660.30 , HORVU1Hr1G083660.34 , HORVU1Hr1G083660.35 , HORVU1Hr1G083660.18 , HORVU1Hr1G083660.19 , HORVU1Hr1G083660.10 , HORVU1Hr1G083660.11 , HORVU1Hr1G083660.12 , HORVU1Hr1G083660.13 , HORVU1Hr1G083660.14 , HORVU1Hr1G083660.15 , HORVU1Hr1G083660.16 , HORVU1Hr1G083660.17
Wheat TraesCS1D02G384700 , TraesCS1A02G377700
Populus -


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cDNA sequences
Sobic.002G242700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
2 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
3 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
4 Sobic.004G224600 expressed protein -
5 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
6 Sobic.001G193500 DnaK family protein, putative, expressed K04043: dnaK, molecular chaperone DnaK
7 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
8 Sobic.003G408300 WD domain, G-beta repeat domain containing protein, expressed K14791: periodic tryptophan protein 1
9 Sobic.010G216300 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
10 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
11 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
12 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
13 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
14 Sobic.004G017400 expressed protein -
15 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
16 Sobic.007G134100 expressed protein -
17 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
18 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
19 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
20 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE


Gene co-expression network
sample Sobic002G242700 Sobic002G242700 Sobic006G084000 Sobic006G084000 Sobic002G242700--Sobic006G084000 Sobic002G116500 Sobic002G116500 Sobic002G242700--Sobic002G116500 Sobic007G143500 Sobic007G143500 Sobic002G242700--Sobic007G143500 Sobic004G224600 Sobic004G224600 Sobic002G242700--Sobic004G224600 Sobic010G247400 Sobic010G247400 Sobic002G242700--Sobic010G247400 Sobic001G193500 Sobic001G193500 Sobic002G242700--Sobic001G193500 Sobic002G394600 Sobic002G394600 Sobic002G242700--Sobic002G394600 Sobic003G408300 Sobic003G408300 Sobic002G242700--Sobic003G408300 Sobic010G216300 Sobic010G216300 Sobic002G242700--Sobic010G216300 Sobic006G269900 Sobic006G269900 Sobic006G084000--Sobic006G269900 Sobic008G160000 Sobic008G160000 Sobic006G084000--Sobic008G160000 Sobic006G010400 Sobic006G010400 Sobic006G084000--Sobic006G010400 Sobic003G407600 Sobic003G407600 Sobic006G084000--Sobic003G407600 Sobic006G084000--Sobic004G224600 Sobic001G259000 Sobic001G259000 Sobic006G084000--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic006G084000--Sobic003G382500 Sobic006G084000--Sobic010G247400 Sobic009G246500 Sobic009G246500 Sobic006G084000--Sobic009G246500 Sobic002G116500--Sobic001G193500 Sobic008G016100 Sobic008G016100 Sobic002G116500--Sobic008G016100 Sobic003G118400 Sobic003G118400 Sobic002G116500--Sobic003G118400 Sobic004G247100 Sobic004G247100 Sobic002G116500--Sobic004G247100 Sobic001G382200 Sobic001G382200 Sobic002G116500--Sobic001G382200 Sobic002G116500--Sobic003G408300 Sobic002G116500--Sobic006G084000 Sobic002G144275 Sobic002G144275 Sobic002G116500--Sobic002G144275 Sobic009G195700 Sobic009G195700 Sobic002G116500--Sobic009G195700 Sobic001G334100 Sobic001G334100 Sobic007G143500--Sobic001G334100 Sobic004G307500 Sobic004G307500 Sobic007G143500--Sobic004G307500 Sobic001G168900 Sobic001G168900 Sobic007G143500--Sobic001G168900 Sobic001G007800 Sobic001G007800 Sobic007G143500--Sobic001G007800 Sobic001G416700 Sobic001G416700 Sobic007G143500--Sobic001G416700 Sobic005G178700 Sobic005G178700 Sobic007G143500--Sobic005G178700 Sobic008G098600 Sobic008G098600 Sobic007G143500--Sobic008G098600 Sobic002G005000 Sobic002G005000 Sobic007G143500--Sobic002G005000 Sobic004G235500 Sobic004G235500 Sobic007G143500--Sobic004G235500 Sobic006G002800 Sobic006G002800 Sobic004G224600--Sobic006G002800 Sobic003G146600 Sobic003G146600 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic006G125500 Sobic006G125500 Sobic004G224600--Sobic006G125500 Sobic002G235200 Sobic002G235200 Sobic004G224600--Sobic002G235200 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic001G145400 Sobic001G145400 Sobic004G224600--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic004G224600--Sobic006G086600 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic010G169300 Sobic010G169300 Sobic001G193500--Sobic010G169300 Sobic001G193500--Sobic002G116500 Sobic002G014400 Sobic002G014400 Sobic001G193500--Sobic002G014400 Sobic007G177300 Sobic007G177300 Sobic001G193500--Sobic007G177300 Sobic001G193500--Sobic008G016100 Sobic001G471000 Sobic001G471000 Sobic001G193500--Sobic001G471000 Sobic001G467100 Sobic001G467100 Sobic001G193500--Sobic001G467100 Sobic009G077600 Sobic009G077600 Sobic001G193500--Sobic009G077600 Sobic005G163700 Sobic005G163700 Sobic001G193500--Sobic005G163700 Sobic002G394600--Sobic002G341800 Sobic006G044600 Sobic006G044600 Sobic002G394600--Sobic006G044600 Sobic002G394600--Sobic002G014400 Sobic001G251600 Sobic001G251600 Sobic002G394600--Sobic001G251600 Sobic009G190300 Sobic009G190300 Sobic002G394600--Sobic009G190300 Sobic004G194900 Sobic004G194900 Sobic002G394600--Sobic004G194900 Sobic001G404100 Sobic001G404100 Sobic002G394600--Sobic001G404100 Sobic002G394600--Sobic007G177300 Sobic004G310500 Sobic004G310500 Sobic002G394600--Sobic004G310500 Sobic003G408300--Sobic008G016100 Sobic002G263200 Sobic002G263200 Sobic003G408300--Sobic002G263200 Sobic007G187900 Sobic007G187900 Sobic003G408300--Sobic007G187900 Sobic003G408300--Sobic002G116500 Sobic001G168100 Sobic001G168100 Sobic003G408300--Sobic001G168100 Sobic003G408300--Sobic006G084000 Sobic002G332200 Sobic002G332200 Sobic003G408300--Sobic002G332200 Sobic006G251500 Sobic006G251500 Sobic003G408300--Sobic006G251500 Sobic009G143800 Sobic009G143800 Sobic003G408300--Sobic009G143800 Sobic006G157000 Sobic006G157000 Sobic010G216300--Sobic006G157000 Sobic010G216300--Sobic003G407600 Sobic010G216300--Sobic006G010400 Sobic010G216300--Sobic001G007800 Sobic010G216300--Sobic006G084000 Sobic010G216300--Sobic008G160000 Sobic003G309300 Sobic003G309300 Sobic010G216300--Sobic003G309300 Sobic009G071700 Sobic009G071700 Sobic010G216300--Sobic009G071700 Sobic010G216300--Sobic007G143500
Octagon: transcription factors


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