Gene annotation
Transcriptome id Sobic.004G017400.1
Synonym
Functional annotation expressed protein
UniProt C5XSZ1
Pfam -
Panther DB PTHR13651 PTHR13651:SF0
NCBI CDD KOG3266; Predicted glycine cleavage system H protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G75980 : Single hybrid motif superfamily protein
RAP-DB (Rice) LOC_Os02g02810.1 : expressed protein
MaizeGDB (Corn) Zm00025a035031
Brachypodium KQJ92962
Barley HORVU6Hr1G012820.1 , HORVU6Hr1G012820.3 , HORVU6Hr1G012820.2 , HORVU6Hr1G012820.5 , HORVU6Hr1G012820.4 , HORVU6Hr1G012820.7 , HORVU6Hr1G012820.6 , HORVU6Hr1G012820.9 , HORVU6Hr1G012820.8 , HORVU6Hr1G012820.11 , HORVU6Hr1G012820.10
Wheat TraesCS6B02G096000 , TraesCS6A02G071500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
2 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
3 Sobic.002G408900 adenyl cyclase, putative, expressed -
4 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A
5 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
6 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
7 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
8 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
9 Sobic.002G171300 - -
10 Sobic.001G482900 glycosyl transferase, group 1 domain containing protein, expressed K03842: beta-1,4-mannosyltransferase
11 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
12 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
13 Sobic.002G131400 GPI mannosyltransferase 1, putative, expressed K05284: GPI mannosyltransferase 1 subunit M
14 Sobic.007G140400 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
15 Sobic.002G231500 phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed K01923: phosphoribosylaminoimidazole-succinocarboxamide synthase
16 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
17 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
18 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
19 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
20 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase


Gene co-expression network
sample Sobic004G017400 Sobic004G017400 Sobic001G251600 Sobic001G251600 Sobic004G017400--Sobic001G251600 Sobic004G156800 Sobic004G156800 Sobic004G017400--Sobic004G156800 Sobic002G408900 Sobic002G408900 Sobic004G017400--Sobic002G408900 Sobic004G208500 Sobic004G208500 Sobic004G017400--Sobic004G208500 Sobic010G223300 Sobic010G223300 Sobic004G017400--Sobic010G223300 Sobic008G055900 Sobic008G055900 Sobic004G017400--Sobic008G055900 Sobic003G146600 Sobic003G146600 Sobic004G017400--Sobic003G146600 Sobic001G434200 Sobic001G434200 Sobic004G017400--Sobic001G434200 Sobic002G171300 Sobic002G171300 Sobic004G017400--Sobic002G171300 Sobic006G010400 Sobic006G010400 Sobic001G251600--Sobic006G010400 Sobic002G423500 Sobic002G423500 Sobic001G251600--Sobic002G423500 SobicK004100 SobicK004100 Sobic001G251600--SobicK004100 Sobic001G251600--Sobic004G208500 Sobic001G145400 Sobic001G145400 Sobic001G251600--Sobic001G145400 Sobic009G249800 Sobic009G249800 Sobic001G251600--Sobic009G249800 Sobic001G251600--Sobic002G408900 Sobic002G394600 Sobic002G394600 Sobic001G251600--Sobic002G394600 Sobic002G412700 Sobic002G412700 Sobic001G251600--Sobic002G412700 Sobic007G102700 Sobic007G102700 Sobic004G156800--Sobic007G102700 Sobic010G237900 Sobic010G237900 Sobic004G156800--Sobic010G237900 Sobic001G259000 Sobic001G259000 Sobic004G156800--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic004G156800--Sobic001G527300 Sobic004G129300 Sobic004G129300 Sobic004G156800--Sobic004G129300 Sobic001G114500 Sobic001G114500 Sobic004G156800--Sobic001G114500 Sobic009G164000 Sobic009G164000 Sobic004G156800--Sobic009G164000 Sobic010G007100 Sobic010G007100 Sobic004G156800--Sobic010G007100 Sobic006G204800 Sobic006G204800 Sobic004G156800--Sobic006G204800 Sobic002G150700 Sobic002G150700 Sobic002G408900--Sobic002G150700 Sobic002G408900--Sobic009G249800 Sobic002G408900--Sobic004G208500 Sobic002G246700 Sobic002G246700 Sobic002G408900--Sobic002G246700 Sobic001G015400 Sobic001G015400 Sobic002G408900--Sobic001G015400 Sobic002G398700 Sobic002G398700 Sobic002G408900--Sobic002G398700 Sobic006G193300 Sobic006G193300 Sobic002G408900--Sobic006G193300 Sobic002G160700 Sobic002G160700 Sobic002G408900--Sobic002G160700 Sobic001G099900 Sobic001G099900 Sobic002G408900--Sobic001G099900 Sobic001G467100 Sobic001G467100 Sobic004G208500--Sobic001G467100 Sobic004G208500--Sobic001G099900 Sobic004G208500--Sobic001G015400 Sobic004G208500--Sobic002G408900 Sobic004G208500--Sobic002G150700 Sobic001G161700 Sobic001G161700 Sobic004G208500--Sobic001G161700 Sobic004G208500--Sobic010G223300 Sobic005G110499 Sobic005G110499 Sobic004G208500--Sobic005G110499 Sobic005G163700 Sobic005G163700 Sobic004G208500--Sobic005G163700 Sobic010G223300--Sobic008G055900 Sobic001G449900 Sobic001G449900 Sobic010G223300--Sobic001G449900 Sobic002G020700 Sobic002G020700 Sobic010G223300--Sobic002G020700 Sobic003G338500 Sobic003G338500 Sobic010G223300--Sobic003G338500 Sobic006G260500 Sobic006G260500 Sobic010G223300--Sobic006G260500 Sobic004G092500 Sobic004G092500 Sobic010G223300--Sobic004G092500 Sobic010G020400 Sobic010G020400 Sobic010G223300--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic010G223300--Sobic002G008800 Sobic006G180000 Sobic006G180000 Sobic010G223300--Sobic006G180000 Sobic008G055900--Sobic002G020700 Sobic008G055900--Sobic010G223300 Sobic008G103300 Sobic008G103300 Sobic008G055900--Sobic008G103300 Sobic008G055900--Sobic010G020400 Sobic006G136400 Sobic006G136400 Sobic008G055900--Sobic006G136400 Sobic001G447300 Sobic001G447300 Sobic008G055900--Sobic001G447300 Sobic008G085700 Sobic008G085700 Sobic008G055900--Sobic008G085700 Sobic006G056200 Sobic006G056200 Sobic008G055900--Sobic006G056200 Sobic008G129600 Sobic008G129600 Sobic008G055900--Sobic008G129600 Sobic003G308500 Sobic003G308500 Sobic003G146600--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic003G146600--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic003G146600--Sobic006G002800 Sobic002G235200 Sobic002G235200 Sobic003G146600--Sobic002G235200 Sobic003G146600--Sobic001G145400 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G012000 Sobic003G012000 Sobic003G146600--Sobic003G012000 Sobic007G071900 Sobic007G071900 Sobic001G434200--Sobic007G071900 Sobic006G093300 Sobic006G093300 Sobic001G434200--Sobic006G093300 Sobic006G039400 Sobic006G039400 Sobic001G434200--Sobic006G039400 Sobic001G468600 Sobic001G468600 Sobic001G434200--Sobic001G468600 Sobic001G333100 Sobic001G333100 Sobic001G434200--Sobic001G333100 Sobic004G171200 Sobic004G171200 Sobic001G434200--Sobic004G171200 Sobic008G087900 Sobic008G087900 Sobic001G434200--Sobic008G087900 Sobic004G121300 Sobic004G121300 Sobic001G434200--Sobic004G121300 Sobic001G014800 Sobic001G014800 Sobic001G434200--Sobic001G014800 Sobic005G108000 Sobic005G108000 Sobic002G171300--Sobic005G108000 Sobic002G171300--Sobic003G146600 Sobic002G171300--Sobic004G224600 Sobic002G171300--Sobic006G002800 Sobic009G211200 Sobic009G211200 Sobic002G171300--Sobic009G211200 Sobic005G026400 Sobic005G026400 Sobic002G171300--Sobic005G026400 Sobic001G431400 Sobic001G431400 Sobic002G171300--Sobic001G431400 Sobic002G171300--Sobic002G235200 Sobic010G102600 Sobic010G102600 Sobic002G171300--Sobic010G102600
Octagon: transcription factors


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