Gene annotation
Transcriptome id Sobic.004G310500.1
Synonym Sb04g034280
Functional annotation ybaK/prolyl-tRNA synthetase family protein, putative, expressed
UniProt C5XSW3
Pfam PF04073
Panther DB PTHR31423 PTHR31423:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0002161; aminoacyl-tRNA editing activity


Orthologs (automatic annotation)
TAIR AT1G44835 : YbaK/aminoacyl-tRNA synthetase-associated domain
RAP-DB (Rice) LOC_Os02g52880.2 : ybaK/prolyl-tRNA synthetase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a033088
Brachypodium KQK01734
Barley HORVU6Hr1G080340.7 , HORVU6Hr1G080340.6 , HORVU6Hr1G080340.5 , HORVU6Hr1G080340.4 , HORVU6Hr1G080340.3 , HORVU6Hr1G080340.2 , HORVU6Hr1G080340.1 , HORVU6Hr1G080340.8 , HORVU6Hr1G080340.10
Wheat TraesCS6D02G309700 , TraesCS6B02G361500 , TraesCS6B02G361500 , TraesCS6B02G361500 , TraesCS6B02G361500 , TraesCS6D02G309700 , TraesCS6A02G330600 , TraesCS6A02G330600 , TraesCS6A02G330600 , TraesCS6A02G330600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G194900 expressed protein -
2 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
3 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
4 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
5 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
6 Sobic.008G156700 phosphoribulokinase/Uridine kinase family protein, expressed -
7 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
8 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
9 Sobic.009G222500 expressed protein -
10 Sobic.009G123600 tungus CG8253-PA, putative, expressed -
11 Sobic.002G231500 phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed K01923: phosphoribosylaminoimidazole-succinocarboxamide synthase
12 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
13 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
14 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
15 Sobic.003G239800 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
16 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
17 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
18 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
19 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
20 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G310500 Sobic004G310500 Sobic004G194900 Sobic004G194900 Sobic004G310500--Sobic004G194900 Sobic009G075800 Sobic009G075800 Sobic004G310500--Sobic009G075800 Sobic006G044600 Sobic006G044600 Sobic004G310500--Sobic006G044600 Sobic001G283200 Sobic001G283200 Sobic004G310500--Sobic001G283200 Sobic009G257600 Sobic009G257600 Sobic004G310500--Sobic009G257600 Sobic008G156700 Sobic008G156700 Sobic004G310500--Sobic008G156700 Sobic001G512300 Sobic001G512300 Sobic004G310500--Sobic001G512300 Sobic002G394600 Sobic002G394600 Sobic004G310500--Sobic002G394600 Sobic009G222500 Sobic009G222500 Sobic004G310500--Sobic009G222500 Sobic010G205300 Sobic010G205300 Sobic004G194900--Sobic010G205300 Sobic002G281300 Sobic002G281300 Sobic004G194900--Sobic002G281300 Sobic004G194900--Sobic006G044600 Sobic003G349300 Sobic003G349300 Sobic004G194900--Sobic003G349300 Sobic009G225000 Sobic009G225000 Sobic004G194900--Sobic009G225000 Sobic004G194900--Sobic004G310500 Sobic001G458700 Sobic001G458700 Sobic004G194900--Sobic001G458700 Sobic001G085100 Sobic001G085100 Sobic004G194900--Sobic001G085100 Sobic005G111900 Sobic005G111900 Sobic004G194900--Sobic005G111900 Sobic009G075800--Sobic009G222500 Sobic004G275700 Sobic004G275700 Sobic009G075800--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic009G075800--Sobic010G020400 Sobic001G199100 Sobic001G199100 Sobic009G075800--Sobic001G199100 Sobic008G004600 Sobic008G004600 Sobic009G075800--Sobic008G004600 Sobic003G012200 Sobic003G012200 Sobic009G075800--Sobic003G012200 Sobic006G136400 Sobic006G136400 Sobic009G075800--Sobic006G136400 Sobic001G392300 Sobic001G392300 Sobic009G075800--Sobic001G392300 Sobic007G071900 Sobic007G071900 Sobic009G075800--Sobic007G071900 Sobic002G341800 Sobic002G341800 Sobic006G044600--Sobic002G341800 Sobic006G044600--Sobic004G194900 Sobic006G044600--Sobic002G394600 Sobic007G184500 Sobic007G184500 Sobic006G044600--Sobic007G184500 Sobic007G166400 Sobic007G166400 Sobic006G044600--Sobic007G166400 Sobic006G044600--Sobic001G458700 Sobic002G077900 Sobic002G077900 Sobic006G044600--Sobic002G077900 Sobic009G058500 Sobic009G058500 Sobic006G044600--Sobic009G058500 Sobic008G055900 Sobic008G055900 Sobic006G044600--Sobic008G055900 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic009G257600--Sobic001G283200 Sobic004G321900 Sobic004G321900 Sobic009G257600--Sobic004G321900 Sobic002G166900 Sobic002G166900 Sobic009G257600--Sobic002G166900 Sobic009G257600--Sobic004G310500 Sobic009G005900 Sobic009G005900 Sobic009G257600--Sobic009G005900 Sobic009G257600--Sobic006G252200 Sobic009G067000 Sobic009G067000 Sobic009G257600--Sobic009G067000 Sobic009G257600--Sobic004G082900 Sobic004G216400 Sobic004G216400 Sobic009G257600--Sobic004G216400 Sobic007G098200 Sobic007G098200 Sobic008G156700--Sobic007G098200 Sobic008G032600 Sobic008G032600 Sobic008G156700--Sobic008G032600 Sobic002G364800 Sobic002G364800 Sobic008G156700--Sobic002G364800 Sobic008G156700--Sobic004G310500 Sobic008G156700--Sobic009G075800 Sobic008G033500 Sobic008G033500 Sobic008G156700--Sobic008G033500 Sobic008G156700--Sobic006G136400 Sobic002G262900 Sobic002G262900 Sobic008G156700--Sobic002G262900 Sobic002G226900 Sobic002G226900 Sobic008G156700--Sobic002G226900 Sobic001G091300 Sobic001G091300 Sobic001G512300--Sobic001G091300 Sobic006G101700 Sobic006G101700 Sobic001G512300--Sobic006G101700 Sobic001G512300--Sobic002G281300 Sobic001G512300--Sobic001G085100 Sobic009G207000 Sobic009G207000 Sobic001G512300--Sobic009G207000 Sobic001G360200 Sobic001G360200 Sobic001G512300--Sobic001G360200 Sobic009G123600 Sobic009G123600 Sobic001G512300--Sobic009G123600 Sobic004G066200 Sobic004G066200 Sobic001G512300--Sobic004G066200 Sobic003G007500 Sobic003G007500 Sobic001G512300--Sobic003G007500 Sobic002G394600--Sobic002G341800 Sobic002G394600--Sobic006G044600 Sobic002G014400 Sobic002G014400 Sobic002G394600--Sobic002G014400 Sobic001G251600 Sobic001G251600 Sobic002G394600--Sobic001G251600 Sobic009G190300 Sobic009G190300 Sobic002G394600--Sobic009G190300 Sobic002G394600--Sobic004G194900 Sobic001G404100 Sobic001G404100 Sobic002G394600--Sobic001G404100 Sobic007G177300 Sobic007G177300 Sobic002G394600--Sobic007G177300 Sobic002G394600--Sobic004G310500 Sobic009G222500--Sobic009G075800 Sobic006G049700 Sobic006G049700 Sobic009G222500--Sobic006G049700 Sobic001G080700 Sobic001G080700 Sobic009G222500--Sobic001G080700 Sobic009G222500--Sobic006G101700 Sobic009G222500--Sobic004G066200 Sobic009G222500--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic009G222500--Sobic010G027600 Sobic003G264200 Sobic003G264200 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000
Octagon: transcription factors


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