Gene annotation
Transcriptome id Sobic.004G212200.1
Synonym ER, Sb04g025750, ATER
Functional annotation enhancer of rudimentary protein, putative, expressed
UniProt C5XXB6
Pfam PF01133
Panther DB PTHR12373
NCBI CDD KOG1766; Enhancer of rudimentary
KEGG Orthology -
Gene Ontology GO:0007049; cell cycle GO:0006221pyrimidine nucleotide biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G10810 : enhancer of rudimentary protein, putative
RAP-DB (Rice) LOC_Os02g39830.1 : enhancer of rudimentary protein, putative, expressed
MaizeGDB (Corn) Zm00025a031934
Brachypodium -
Barley HORVU6Hr1G056200.1 , HORVU6Hr1G056200.2
Wheat TraesCS6A02G219900 , TraesCS6B02G249300 , TraesCS6D02G202800
Populus -


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cDNA sequences
Sobic.004G212200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G393500 expressed protein -
2 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
3 Sobic.003G261400 DUF292 domain containing protein, expressed -
4 Sobic.003G274800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
5 Sobic.010G000900 spotted leaf 11, putative, expressed -
6 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -
7 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
8 Sobic.003G261500 lipase, putative, expressed -
9 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
10 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
11 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
12 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
13 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
14 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
15 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
16 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
17 Sobic.004G194900 expressed protein -
18 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
19 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
20 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3


Gene co-expression network
sample Sobic004G212200 Sobic004G212200 Sobic002G393500 Sobic002G393500 Sobic004G212200--Sobic002G393500 Sobic009G228800 Sobic009G228800 Sobic004G212200--Sobic009G228800 Sobic003G261400 Sobic003G261400 Sobic004G212200--Sobic003G261400 Sobic003G274800 Sobic003G274800 Sobic004G212200--Sobic003G274800 Sobic010G000900 Sobic010G000900 Sobic004G212200--Sobic010G000900 Sobic001G388200 Sobic001G388200 Sobic004G212200--Sobic001G388200 Sobic002G166900 Sobic002G166900 Sobic004G212200--Sobic002G166900 Sobic003G261500 Sobic003G261500 Sobic004G212200--Sobic003G261500 Sobic001G512300 Sobic001G512300 Sobic004G212200--Sobic001G512300 Sobic002G393500--Sobic004G212200 Sobic002G393500--Sobic003G274800 Sobic002G178601 Sobic002G178601 Sobic002G393500--Sobic002G178601 Sobic002G393500--Sobic009G228800 Sobic002G393500--Sobic010G000900 Sobic001G047400 Sobic001G047400 Sobic002G393500--Sobic001G047400 Sobic002G226900 Sobic002G226900 Sobic002G393500--Sobic002G226900 Sobic001G021300 Sobic001G021300 Sobic002G393500--Sobic001G021300 Sobic002G393500--Sobic003G261400 Sobic001G073000 Sobic001G073000 Sobic009G228800--Sobic001G073000 Sobic009G228800--Sobic004G212200 Sobic007G203700 Sobic007G203700 Sobic009G228800--Sobic007G203700 Sobic003G015900 Sobic003G015900 Sobic009G228800--Sobic003G015900 Sobic009G228800--Sobic010G000900 Sobic003G248600 Sobic003G248600 Sobic009G228800--Sobic003G248600 Sobic009G228800--Sobic001G512300 Sobic004G356900 Sobic004G356900 Sobic009G228800--Sobic004G356900 Sobic009G228800--Sobic002G393500 Sobic001G283200 Sobic001G283200 Sobic003G261400--Sobic001G283200 Sobic002G281300 Sobic002G281300 Sobic003G261400--Sobic002G281300 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic004G130900 Sobic004G130900 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic003G261400--Sobic010G000900 Sobic003G274800--Sobic004G212200 Sobic003G274800--Sobic010G000900 Sobic003G274800--Sobic003G261400 Sobic003G274800--Sobic002G393500 Sobic003G274800--Sobic001G283200 Sobic003G274800--Sobic003G261500 Sobic003G012200 Sobic003G012200 Sobic003G274800--Sobic003G012200 Sobic003G077900 Sobic003G077900 Sobic003G274800--Sobic003G077900 Sobic003G274800--Sobic001G047400 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic010G000900--Sobic003G012200 Sobic010G000900--Sobic001G047400 Sobic010G000900--Sobic003G261400 Sobic010G000900--Sobic004G130900 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic010G000900--Sobic001G388200 Sobic001G085100 Sobic001G085100 Sobic010G000900--Sobic001G085100 Sobic003G349300 Sobic003G349300 Sobic001G388200--Sobic003G349300 Sobic006G232200 Sobic006G232200 Sobic001G388200--Sobic006G232200 Sobic009G135600 Sobic009G135600 Sobic001G388200--Sobic009G135600 Sobic010G083700 Sobic010G083700 Sobic001G388200--Sobic010G083700 Sobic001G388200--Sobic002G281300 Sobic001G054200 Sobic001G054200 Sobic001G388200--Sobic001G054200 Sobic001G388200--Sobic010G000900 Sobic001G314500 Sobic001G314500 Sobic001G388200--Sobic001G314500 Sobic001G388200--Sobic003G261400 Sobic006G090000 Sobic006G090000 Sobic002G166900--Sobic006G090000 Sobic004G067100 Sobic004G067100 Sobic002G166900--Sobic004G067100 Sobic002G166900--Sobic001G283200 Sobic002G385900 Sobic002G385900 Sobic002G166900--Sobic002G385900 Sobic010G188100 Sobic010G188100 Sobic002G166900--Sobic010G188100 Sobic004G167400 Sobic004G167400 Sobic002G166900--Sobic004G167400 Sobic004G321900 Sobic004G321900 Sobic002G166900--Sobic004G321900 Sobic002G166900--Sobic004G212200 Sobic001G220400 Sobic001G220400 Sobic002G166900--Sobic001G220400 Sobic003G261500--Sobic003G261400 Sobic003G217400 Sobic003G217400 Sobic003G261500--Sobic003G217400 Sobic003G261500--Sobic010G000900 Sobic003G261500--Sobic001G283200 Sobic007G168600 Sobic007G168600 Sobic003G261500--Sobic007G168600 Sobic003G261500--Sobic001G051200 Sobic003G261500--Sobic004G212200 Sobic003G261500--Sobic003G124800 Sobic004G086600 Sobic004G086600 Sobic003G261500--Sobic004G086600 Sobic001G091300 Sobic001G091300 Sobic001G512300--Sobic001G091300 Sobic006G101700 Sobic006G101700 Sobic001G512300--Sobic006G101700 Sobic001G512300--Sobic002G281300 Sobic001G512300--Sobic001G085100 Sobic009G207000 Sobic009G207000 Sobic001G512300--Sobic009G207000 Sobic001G360200 Sobic001G360200 Sobic001G512300--Sobic001G360200 Sobic009G123600 Sobic009G123600 Sobic001G512300--Sobic009G123600 Sobic004G066200 Sobic004G066200 Sobic001G512300--Sobic004G066200 Sobic003G007500 Sobic003G007500 Sobic001G512300--Sobic003G007500
Octagon: transcription factors


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