Gene annotation
Transcriptome id Sobic.005G047300.1
Synonym Sb05g003900, TLP1, AtTLP1
Functional annotation OsFBT13 - F-box and tubby domain containing protein, expressed
UniProt C5Y569
Pfam PF00646 PF01167
Panther DB PTHR16517 PTHR16517:SF43
NCBI CDD KOG2502; Tub family proteins
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G76900 : tubby like protein 1
RAP-DB (Rice) LOC_Os11g06420.1 : OsFBT13 - F-box and tubby domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034171 , Zm00025a021720 , Zm00025a043841 , Zm00025a010516
Brachypodium KQJ94772 , PNT64127 , KQK00939 , KQJ85450 , KQJ89302 , KQJ89301
Barley HORVU1Hr1G074940.11 , HORVU1Hr1G074940.10 , HORVU6Hr1G068970.7 , HORVU6Hr1G068970.5 , HORVU6Hr1G068970.6 , HORVU6Hr1G068970.2 , HORVU6Hr1G068970.3 , HORVU6Hr1G068970.1 , HORVU6Hr1G068970.4 , HORVU1Hr1G074940.1 , HORVU1Hr1G074940.3 , HORVU1Hr1G074940.2 , HORVU1Hr1G074940.7 , HORVU3Hr1G083290.5 , HORVU3Hr1G083290.4 , HORVU3Hr1G083290.7 , HORVU3Hr1G083290.6 , HORVU3Hr1G083290.1 , HORVU3Hr1G083290.3 , HORVU3Hr1G083290.2 , HORVU4Hr1G020110.4 , HORVU4Hr1G020110.5 , HORVU4Hr1G020110.2 , HORVU4Hr1G020110.3 , HORVU4Hr1G020110.1 , HORVU2Hr1G124880.1 , HORVU2Hr1G124880.3 , HORVU2Hr1G124880.2 , HORVU2Hr1G124880.5 , HORVU2Hr1G124880.4 , HORVU2Hr1G124880.7 , HORVU2Hr1G124880.6 , HORVU2Hr1G124880.9 , HORVU2Hr1G124880.8 , HORVU1Hr1G074940.9 , HORVU2Hr1G124880.11 , HORVU2Hr1G124880.10 , HORVU2Hr1G124880.13 , HORVU2Hr1G124880.12
Wheat TraesCS7B02G227000 , TraesCS2D02G584900 , TraesCS2B02G613800 , TraesCS4B02G112600 , TraesCS1A02G273100 , TraesCS1B02G282900 , TraesCS6D02G252800 , TraesCS6D02G252800 , TraesCS3D02G371600 , TraesCS5D02G132000 , TraesCS6A02G272800 , TraesCS6A02G272800 , TraesCS5B02G123800 , TraesCS7D02G323100 , TraesCS3B02G411000 , TraesCS4D02G110100 , TraesCS1D02G273200 , TraesCS2A02G574000 , TraesCS6B02G300200 , TraesCS3A02G378300 , TraesCS7A02G326400 , TraesCS4A02G209000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G051700 expressed protein -
2 Sobic.001G315400 expressed protein -
3 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
4 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
5 Sobic.002G263200 expressed protein -
6 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
7 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
8 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
9 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -
10 Sobic.001G484200 "RGA1/D1(Ortholog in rice:Ashikari, 1999)"(PubMedID : 31659848)@G-protein alpha subunit, putative, expressed K04640: guanine nucleotide-binding protein subunit alpha, other
11 Sobic.010G186600 expressed protein -
12 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
13 Sobic.003G416700 homeobox domain containing protein, expressed -
14 Sobic.004G156500 expressed protein -
15 Sobic.010G262100 expressed protein -
16 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
17 Sobic.003G052800 RST1, putative, expressed -
18 Sobic.002G130900 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
19 Sobic.010G279900 PHD-finger domain containing protein, expressed -
20 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)


Gene co-expression network
sample Sobic005G047300 Sobic005G047300 Sobic001G051700 Sobic001G051700 Sobic005G047300--Sobic001G051700 Sobic001G315400 Sobic001G315400 Sobic005G047300--Sobic001G315400 Sobic003G409200 Sobic003G409200 Sobic005G047300--Sobic003G409200 Sobic008G057000 Sobic008G057000 Sobic005G047300--Sobic008G057000 Sobic002G263200 Sobic002G263200 Sobic005G047300--Sobic002G263200 Sobic001G346900 Sobic001G346900 Sobic005G047300--Sobic001G346900 Sobic001G013300 Sobic001G013300 Sobic005G047300--Sobic001G013300 Sobic001G373000 Sobic001G373000 Sobic005G047300--Sobic001G373000 Sobic002G148400 Sobic002G148400 Sobic005G047300--Sobic002G148400 Sobic003G416700 Sobic003G416700 Sobic001G051700--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G051700--Sobic002G145800 Sobic006G267600 Sobic006G267600 Sobic001G051700--Sobic006G267600 Sobic002G154000 Sobic002G154000 Sobic001G051700--Sobic002G154000 Sobic006G261400 Sobic006G261400 Sobic001G051700--Sobic006G261400 Sobic006G224800 Sobic006G224800 Sobic001G051700--Sobic006G224800 Sobic007G183300 Sobic007G183300 Sobic001G051700--Sobic007G183300 Sobic010G275500 Sobic010G275500 Sobic001G051700--Sobic010G275500 Sobic003G062300 Sobic003G062300 Sobic001G051700--Sobic003G062300 Sobic001G367100 Sobic001G367100 Sobic001G315400--Sobic001G367100 Sobic003G077500 Sobic003G077500 Sobic001G315400--Sobic003G077500 Sobic002G079100 Sobic002G079100 Sobic001G315400--Sobic002G079100 Sobic002G002100 Sobic002G002100 Sobic001G315400--Sobic002G002100 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic004G128200 Sobic004G128200 Sobic001G315400--Sobic004G128200 Sobic004G227500 Sobic004G227500 Sobic001G315400--Sobic004G227500 Sobic001G395200 Sobic001G395200 Sobic001G315400--Sobic001G395200 Sobic003G409200--Sobic001G346900 Sobic010G215900 Sobic010G215900 Sobic003G409200--Sobic010G215900 Sobic004G111000 Sobic004G111000 Sobic003G409200--Sobic004G111000 Sobic003G409200--Sobic008G057000 Sobic003G427100 Sobic003G427100 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic004G285000 Sobic004G285000 Sobic003G409200--Sobic004G285000 Sobic010G279900 Sobic010G279900 Sobic003G409200--Sobic010G279900 Sobic003G409200--Sobic002G145800 Sobic008G057000--Sobic003G409200 Sobic005G200800 Sobic005G200800 Sobic008G057000--Sobic005G200800 Sobic008G057000--Sobic001G346900 Sobic004G086200 Sobic004G086200 Sobic008G057000--Sobic004G086200 Sobic008G057000--Sobic002G148400 Sobic008G057000--Sobic010G279900 Sobic001G484200 Sobic001G484200 Sobic008G057000--Sobic001G484200 Sobic009G032200 Sobic009G032200 Sobic008G057000--Sobic009G032200 Sobic008G057000--Sobic007G183300 Sobic002G263200--Sobic001G373000 Sobic004G006600 Sobic004G006600 Sobic002G263200--Sobic004G006600 Sobic010G186600 Sobic010G186600 Sobic002G263200--Sobic010G186600 Sobic001G023800 Sobic001G023800 Sobic002G263200--Sobic001G023800 Sobic003G408300 Sobic003G408300 Sobic002G263200--Sobic003G408300 Sobic009G143800 Sobic009G143800 Sobic002G263200--Sobic009G143800 Sobic002G263200--Sobic005G047300 Sobic002G263200--Sobic001G013300 Sobic002G263200--Sobic001G346900 Sobic001G346900--Sobic004G086200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic001G346900--Sobic004G285000 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic001G013300--Sobic008G147200 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic001G013300--Sobic010G215900 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G013300--Sobic001G023800 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic004G049700 Sobic004G049700 Sobic002G148400--Sobic004G049700 Sobic009G129600 Sobic009G129600 Sobic002G148400--Sobic009G129600 Sobic002G148400--Sobic008G057000 Sobic002G148400--Sobic001G484200 Sobic002G148400--Sobic001G134300 Sobic004G156500 Sobic004G156500 Sobic002G148400--Sobic004G156500 Sobic002G357100 Sobic002G357100 Sobic002G148400--Sobic002G357100 Sobic002G148400--Sobic004G086200 Sobic001G346700 Sobic001G346700 Sobic002G148400--Sobic001G346700
Octagon: transcription factors


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