Gene annotation
Transcriptome id Sobic.001G222000.1
Synonym
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6QKC0
Pfam PF00400
Panther DB PTHR13083
NCBI CDD KOG1333; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G49660 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os05g23430.2 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017644
Brachypodium KQJ97059
Barley HORVU1Hr1G040250.21 , HORVU1Hr1G040250.20 , HORVU1Hr1G040250.23 , HORVU1Hr1G040250.22 , HORVU1Hr1G040250.25 , HORVU1Hr1G040250.24 , HORVU1Hr1G040250.27 , HORVU1Hr1G040250.26 , HORVU1Hr1G040250.29 , HORVU1Hr1G040250.28 , HORVU1Hr1G040250.6 , HORVU1Hr1G040250.7 , HORVU1Hr1G040250.4 , HORVU1Hr1G040250.5 , HORVU1Hr1G040250.2 , HORVU1Hr1G040250.3 , HORVU1Hr1G040250.1 , HORVU1Hr1G040250.8 , HORVU1Hr1G040250.9 , HORVU1Hr1G040250.36 , HORVU1Hr1G040250.37 , HORVU1Hr1G040250.34 , HORVU1Hr1G040250.35 , HORVU1Hr1G040250.32 , HORVU1Hr1G040250.33 , HORVU1Hr1G040250.30 , HORVU1Hr1G040250.31 , HORVU1Hr1G040250.38 , HORVU1Hr1G040250.39 , HORVU1Hr1G040250.48 , HORVU1Hr1G040250.43 , HORVU1Hr1G040250.42 , HORVU1Hr1G040250.41 , HORVU1Hr1G040250.40 , HORVU1Hr1G040250.47 , HORVU1Hr1G040250.46 , HORVU1Hr1G040250.45 , HORVU1Hr1G040250.44 , HORVU1Hr1G040250.18 , HORVU1Hr1G040250.19 , HORVU1Hr1G040250.14 , HORVU1Hr1G040250.15 , HORVU1Hr1G040250.16 , HORVU1Hr1G040250.17 , HORVU1Hr1G040250.10 , HORVU1Hr1G040250.11 , HORVU1Hr1G040250.12 , HORVU1Hr1G040250.13 , HORVU1Hr1G040200.1 , HORVU1Hr1G040200.2
Wheat TraesCS1B02G169400 , TraesCS1B02G169400 , TraesCS1B02G169400 , TraesCS1B02G169400 , TraesCS1B02G169400 , TraesCS1B02G169400 , TraesCS1D02G148800 , TraesCS1D02G148800 , TraesCS1D02G148800 , TraesCS1D02G148800 , TraesCS1A02G152000 , TraesCS1A02G152000 , TraesCS1A02G152000 , TraesCS1A02G152000 , TraesCS1A02G152000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
2 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
3 Sobic.001G023800 expressed protein -
4 Sobic.001G393700 expressed protein -
5 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
6 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
7 Sobic.003G074200 actin, putative, expressed K11672: ACTR5, ARP5, actin-related protein 5
8 Sobic.001G355200 tRNA pseudouridine synthase family protein, putative, expressed K01855: PUS3, tRNA pseudouridine38/39 synthase
9 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
10 Sobic.002G263200 expressed protein -
11 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
12 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
13 Sobic.010G114900 expressed protein -
14 Sobic.001G088900 serine/threonine-protein kinase TOUSLED, putative, expressed K08864: tousled-like kinase
15 Sobic.007G187600 pentatricopeptide, putative, expressed -
16 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.009G045200 double-stranded RNA binding motif containing protein, expressed -
18 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
19 Sobic.009G020500 expressed protein -
20 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1


Gene co-expression network
sample Sobic001G222000 Sobic001G222000 Sobic001G373000 Sobic001G373000 Sobic001G222000--Sobic001G373000 Sobic001G135500 Sobic001G135500 Sobic001G222000--Sobic001G135500 Sobic001G023800 Sobic001G023800 Sobic001G222000--Sobic001G023800 Sobic001G393700 Sobic001G393700 Sobic001G222000--Sobic001G393700 Sobic007G168300 Sobic007G168300 Sobic001G222000--Sobic007G168300 Sobic008G057000 Sobic008G057000 Sobic001G222000--Sobic008G057000 Sobic003G074200 Sobic003G074200 Sobic001G222000--Sobic003G074200 Sobic001G355200 Sobic001G355200 Sobic001G222000--Sobic001G355200 Sobic009G032200 Sobic009G032200 Sobic001G222000--Sobic009G032200 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic003G212900 Sobic003G212900 Sobic001G135500--Sobic003G212900 Sobic010G077500 Sobic010G077500 Sobic001G135500--Sobic010G077500 Sobic002G245000 Sobic002G245000 Sobic001G135500--Sobic002G245000 Sobic007G187600 Sobic007G187600 Sobic001G135500--Sobic007G187600 Sobic002G390400 Sobic002G390400 Sobic001G135500--Sobic002G390400 Sobic008G021000 Sobic008G021000 Sobic001G135500--Sobic008G021000 Sobic009G045200 Sobic009G045200 Sobic001G135500--Sobic009G045200 Sobic001G005600 Sobic001G005600 Sobic001G135500--Sobic001G005600 Sobic001G034500 Sobic001G034500 Sobic001G135500--Sobic001G034500 Sobic010G266500 Sobic010G266500 Sobic001G023800--Sobic010G266500 Sobic001G023800--Sobic007G187600 Sobic010G186600 Sobic010G186600 Sobic001G023800--Sobic010G186600 Sobic001G023800--Sobic002G005000 Sobic001G023800--Sobic001G373000 Sobic003G427100 Sobic003G427100 Sobic001G023800--Sobic003G427100 Sobic001G023800--Sobic001G013300 Sobic008G164600 Sobic008G164600 Sobic001G023800--Sobic008G164600 Sobic001G291800 Sobic001G291800 Sobic001G023800--Sobic001G291800 Sobic002G430300 Sobic002G430300 Sobic001G393700--Sobic002G430300 Sobic001G145400 Sobic001G145400 Sobic001G393700--Sobic001G145400 Sobic010G099800 Sobic010G099800 Sobic001G393700--Sobic010G099800 Sobic005G114800 Sobic005G114800 Sobic001G393700--Sobic005G114800 Sobic006G224800 Sobic006G224800 Sobic001G393700--Sobic006G224800 Sobic001G103300 Sobic001G103300 Sobic001G393700--Sobic001G103300 Sobic003G405500 Sobic003G405500 Sobic001G393700--Sobic003G405500 Sobic003G240700 Sobic003G240700 Sobic001G393700--Sobic003G240700 Sobic001G393700--Sobic009G045200 Sobic003G042400 Sobic003G042400 Sobic007G168300--Sobic003G042400 Sobic005G200800 Sobic005G200800 Sobic007G168300--Sobic005G200800 Sobic010G001100 Sobic010G001100 Sobic007G168300--Sobic010G001100 Sobic002G154000 Sobic002G154000 Sobic007G168300--Sobic002G154000 Sobic009G126300 Sobic009G126300 Sobic007G168300--Sobic009G126300 Sobic007G183300 Sobic007G183300 Sobic007G168300--Sobic007G183300 Sobic001G453000 Sobic001G453000 Sobic007G168300--Sobic001G453000 Sobic001G376900 Sobic001G376900 Sobic007G168300--Sobic001G376900 Sobic005G200900 Sobic005G200900 Sobic007G168300--Sobic005G200900 Sobic003G409200 Sobic003G409200 Sobic008G057000--Sobic003G409200 Sobic008G057000--Sobic005G200800 Sobic001G346900 Sobic001G346900 Sobic008G057000--Sobic001G346900 Sobic004G086200 Sobic004G086200 Sobic008G057000--Sobic004G086200 Sobic002G148400 Sobic002G148400 Sobic008G057000--Sobic002G148400 Sobic010G279900 Sobic010G279900 Sobic008G057000--Sobic010G279900 Sobic001G484200 Sobic001G484200 Sobic008G057000--Sobic001G484200 Sobic008G057000--Sobic009G032200 Sobic008G057000--Sobic007G183300 Sobic003G074200--Sobic007G168300 Sobic003G062300 Sobic003G062300 Sobic003G074200--Sobic003G062300 Sobic004G309900 Sobic004G309900 Sobic003G074200--Sobic004G309900 Sobic003G194500 Sobic003G194500 Sobic003G074200--Sobic003G194500 Sobic004G236800 Sobic004G236800 Sobic003G074200--Sobic004G236800 Sobic001G008200 Sobic001G008200 Sobic003G074200--Sobic001G008200 Sobic003G074200--Sobic003G405500 Sobic006G210000 Sobic006G210000 Sobic003G074200--Sobic006G210000 Sobic003G074200--Sobic003G042400 Sobic001G393900 Sobic001G393900 Sobic001G355200--Sobic001G393900 Sobic004G340400 Sobic004G340400 Sobic001G355200--Sobic004G340400 Sobic001G052400 Sobic001G052400 Sobic001G355200--Sobic001G052400 Sobic004G320500 Sobic004G320500 Sobic001G355200--Sobic004G320500 Sobic001G355200--Sobic001G346900 Sobic001G355200--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic001G355200--Sobic009G119000 Sobic003G188400 Sobic003G188400 Sobic001G355200--Sobic003G188400 Sobic008G014500 Sobic008G014500 Sobic001G355200--Sobic008G014500 Sobic010G236200 Sobic010G236200 Sobic009G032200--Sobic010G236200 Sobic010G233000 Sobic010G233000 Sobic009G032200--Sobic010G233000 Sobic010G269300 Sobic010G269300 Sobic009G032200--Sobic010G269300 Sobic004G043750 Sobic004G043750 Sobic009G032200--Sobic004G043750 Sobic009G032200--Sobic008G057000 Sobic009G257500 Sobic009G257500 Sobic009G032200--Sobic009G257500 Sobic003G221500 Sobic003G221500 Sobic009G032200--Sobic003G221500 Sobic010G215900 Sobic010G215900 Sobic009G032200--Sobic010G215900 Sobic009G032200--Sobic001G135500
Octagon: transcription factors


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