Gene annotation
Transcriptome id Sobic.010G233000.2,Sobic.010G233000.1
Synonym
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A1W0VUG0 , C5Z873
Pfam -
Panther DB PTHR38160 PTHR38160:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G21810 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os06g46890.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a041867 , Zm00025a018147
Brachypodium KQJ93449 , KQJ93454 , KQJ93451 , KQJ93452
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G233000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
2 Sobic.004G006600 transcription factor jumonji, putative, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
3 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
4 Sobic.001G484200 "RGA1/D1(Ortholog in rice:Ashikari, 1999)"(PubMedID : 31659848)@G-protein alpha subunit, putative, expressed K04640: guanine nucleotide-binding protein subunit alpha, other
5 Sobic.004G177600 DDT domain containing protein, putative, expressed -
6 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
7 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
8 Sobic.010G215900 type II intron maturase protein, putative, expressed -
9 Sobic.003G221500 CENP-C1, putative, expressed -
10 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
11 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
12 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
13 Sobic.004G129600 expressed protein -
14 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
15 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
16 Sobic.003G330900 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
17 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
18 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
19 Sobic.004G111000 bromodomain containing protein, expressed -
20 Sobic.004G010500 OsFBX52 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic010G233000 Sobic010G233000 Sobic009G032200 Sobic009G032200 Sobic010G233000--Sobic009G032200 Sobic004G006600 Sobic004G006600 Sobic010G233000--Sobic004G006600 Sobic004G043750 Sobic004G043750 Sobic010G233000--Sobic004G043750 Sobic001G484200 Sobic001G484200 Sobic010G233000--Sobic001G484200 Sobic004G177600 Sobic004G177600 Sobic010G233000--Sobic004G177600 Sobic010G236200 Sobic010G236200 Sobic010G233000--Sobic010G236200 Sobic008G057000 Sobic008G057000 Sobic010G233000--Sobic008G057000 Sobic010G215900 Sobic010G215900 Sobic010G233000--Sobic010G215900 Sobic003G221500 Sobic003G221500 Sobic010G233000--Sobic003G221500 Sobic009G032200--Sobic010G236200 Sobic009G032200--Sobic010G233000 Sobic010G269300 Sobic010G269300 Sobic009G032200--Sobic010G269300 Sobic009G032200--Sobic004G043750 Sobic009G032200--Sobic008G057000 Sobic009G257500 Sobic009G257500 Sobic009G032200--Sobic009G257500 Sobic009G032200--Sobic003G221500 Sobic009G032200--Sobic010G215900 Sobic001G135500 Sobic001G135500 Sobic009G032200--Sobic001G135500 Sobic004G006600--Sobic010G233000 Sobic002G263200 Sobic002G263200 Sobic004G006600--Sobic002G263200 Sobic010G186600 Sobic010G186600 Sobic004G006600--Sobic010G186600 Sobic001G098400 Sobic001G098400 Sobic004G006600--Sobic001G098400 Sobic001G373000 Sobic001G373000 Sobic004G006600--Sobic001G373000 Sobic003G330900 Sobic003G330900 Sobic004G006600--Sobic003G330900 Sobic006G188500 Sobic006G188500 Sobic004G006600--Sobic006G188500 Sobic009G255600 Sobic009G255600 Sobic004G006600--Sobic009G255600 Sobic004G315500 Sobic004G315500 Sobic004G006600--Sobic004G315500 Sobic009G190200 Sobic009G190200 Sobic004G043750--Sobic009G190200 Sobic006G280100 Sobic006G280100 Sobic004G043750--Sobic006G280100 Sobic009G259900 Sobic009G259900 Sobic004G043750--Sobic009G259900 Sobic004G043750--Sobic010G236200 Sobic001G395200 Sobic001G395200 Sobic004G043750--Sobic001G395200 Sobic004G111000 Sobic004G111000 Sobic004G043750--Sobic004G111000 Sobic004G043750--Sobic010G269300 Sobic007G125700 Sobic007G125700 Sobic004G043750--Sobic007G125700 Sobic004G043750--Sobic010G233000 Sobic002G148400 Sobic002G148400 Sobic001G484200--Sobic002G148400 Sobic001G484200--Sobic008G057000 Sobic001G484200--Sobic010G233000 Sobic001G484200--Sobic001G373000 Sobic001G346900 Sobic001G346900 Sobic001G484200--Sobic001G346900 Sobic001G484200--Sobic004G043750 Sobic003G409200 Sobic003G409200 Sobic001G484200--Sobic003G409200 Sobic001G013300 Sobic001G013300 Sobic001G484200--Sobic001G013300 Sobic009G235200 Sobic009G235200 Sobic001G484200--Sobic009G235200 Sobic004G177600--Sobic010G233000 Sobic003G388000 Sobic003G388000 Sobic004G177600--Sobic003G388000 Sobic004G177600--Sobic003G221500 Sobic004G339700 Sobic004G339700 Sobic004G177600--Sobic004G339700 Sobic008G063600 Sobic008G063600 Sobic004G177600--Sobic008G063600 Sobic004G256300 Sobic004G256300 Sobic004G177600--Sobic004G256300 Sobic004G307900 Sobic004G307900 Sobic004G177600--Sobic004G307900 Sobic001G462600 Sobic001G462600 Sobic004G177600--Sobic001G462600 Sobic004G322300 Sobic004G322300 Sobic004G177600--Sobic004G322300 Sobic010G236200--Sobic009G032200 Sobic010G236200--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic010G236200--Sobic010G149600 Sobic010G236200--Sobic004G043750 Sobic010G236200--Sobic003G221500 Sobic010G236200--Sobic004G111000 Sobic002G254800 Sobic002G254800 Sobic010G236200--Sobic002G254800 Sobic010G236200--Sobic009G257500 Sobic010G236200--Sobic007G125700 Sobic008G057000--Sobic003G409200 Sobic005G200800 Sobic005G200800 Sobic008G057000--Sobic005G200800 Sobic008G057000--Sobic001G346900 Sobic004G086200 Sobic004G086200 Sobic008G057000--Sobic004G086200 Sobic008G057000--Sobic002G148400 Sobic010G279900 Sobic010G279900 Sobic008G057000--Sobic010G279900 Sobic008G057000--Sobic001G484200 Sobic008G057000--Sobic009G032200 Sobic007G183300 Sobic007G183300 Sobic008G057000--Sobic007G183300 Sobic010G215900--Sobic003G409200 Sobic004G285000 Sobic004G285000 Sobic010G215900--Sobic004G285000 Sobic010G215900--Sobic004G111000 Sobic010G215900--Sobic001G346900 Sobic010G215900--Sobic001G013300 Sobic006G226300 Sobic006G226300 Sobic010G215900--Sobic006G226300 Sobic008G147200 Sobic008G147200 Sobic010G215900--Sobic008G147200 Sobic003G042400 Sobic003G042400 Sobic010G215900--Sobic003G042400 Sobic004G155600 Sobic004G155600 Sobic010G215900--Sobic004G155600 Sobic003G221500--Sobic004G256300 Sobic002G142700 Sobic002G142700 Sobic003G221500--Sobic002G142700 Sobic003G004600 Sobic003G004600 Sobic003G221500--Sobic003G004600 Sobic003G221500--Sobic010G236200 Sobic003G221500--Sobic001G462600 Sobic006G245700 Sobic006G245700 Sobic003G221500--Sobic006G245700 Sobic003G221500--Sobic009G032200 Sobic010G154000 Sobic010G154000 Sobic003G221500--Sobic010G154000 Sobic003G222700 Sobic003G222700 Sobic003G221500--Sobic003G222700
Octagon: transcription factors


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