Gene annotation
Transcriptome id Sobic.004G020900.1
Synonym OTS2, ULP1C
Functional annotation ulp1 protease family protein, putative, expressed
UniProt C5XT31 , D8L801
Pfam PF02902
Panther DB PTHR12606 PTHR12606:SF28
NCBI CDD KOG3246; Sentrin-specific cysteine protease (Ulp1 family)
KEGG Orthology K16287; ubiquitin-like-specific protease 1C/D
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G10570 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os12g41380.1 : ulp1 protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a004641 , Zm00025a034941
Brachypodium PNT62362 , PNT62361 , KQJ85904 , KQJ85905
Barley HORVU5Hr1G012790.4 , HORVU5Hr1G012790.5 , HORVU5Hr1G012790.6 , HORVU5Hr1G012790.7 , HORVU5Hr1G012790.1 , HORVU5Hr1G012790.2 , HORVU5Hr1G012790.8 , HORVU5Hr1G012790.9 , HORVU5Hr1G012790.44 , HORVU5Hr1G012790.41 , HORVU5Hr1G012790.40 , HORVU5Hr1G012790.43 , HORVU5Hr1G012790.42 , HORVU5Hr1G012790.29 , HORVU5Hr1G012790.28 , HORVU5Hr1G012790.27 , HORVU5Hr1G012790.25 , HORVU5Hr1G012790.23 , HORVU5Hr1G012790.22 , HORVU5Hr1G012790.21 , HORVU5Hr1G012790.20 , HORVU5Hr1G012790.38 , HORVU5Hr1G012790.39 , HORVU5Hr1G012790.34 , HORVU5Hr1G012790.36 , HORVU5Hr1G012790.37 , HORVU5Hr1G012790.30 , HORVU5Hr1G012790.31 , HORVU5Hr1G012790.32 , HORVU5Hr1G012790.33 , HORVU5Hr1G012790.16 , HORVU5Hr1G012790.17 , HORVU5Hr1G012790.15 , HORVU5Hr1G012790.12 , HORVU5Hr1G012790.13 , HORVU5Hr1G012790.10 , HORVU5Hr1G012790.11 , HORVU5Hr1G012790.18 , HORVU5Hr1G012790.19
Wheat TraesCS5A02G053400 , TraesCS5A02G053400 , TraesCS5B02G063000 , TraesCS5D02G064600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
2 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
3 Sobic.008G017900 expressed protein -
4 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
5 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
6 Sobic.009G122800 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
7 Sobic.002G263700 bromodomain protein 103, putative, expressed -
8 Sobic.010G233000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
9 Sobic.002G154400 MIM, putative, expressed -
10 Sobic.004G313500 acetyltransferase, GNAT family, putative, expressed -
11 Sobic.004G049700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
12 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -
13 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
14 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
15 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -
16 Sobic.001G522400 FHA domain containing protein, putative, expressed -
17 Sobic.004G111000 bromodomain containing protein, expressed -
18 Sobic.009G216500 expressed protein -
19 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
20 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G020900 Sobic004G020900 Sobic007G039300 Sobic007G039300 Sobic004G020900--Sobic007G039300 Sobic004G043750 Sobic004G043750 Sobic004G020900--Sobic004G043750 Sobic008G017900 Sobic008G017900 Sobic004G020900--Sobic008G017900 Sobic009G032200 Sobic009G032200 Sobic004G020900--Sobic009G032200 Sobic010G269300 Sobic010G269300 Sobic004G020900--Sobic010G269300 Sobic009G122800 Sobic009G122800 Sobic004G020900--Sobic009G122800 Sobic002G263700 Sobic002G263700 Sobic004G020900--Sobic002G263700 Sobic010G233000 Sobic010G233000 Sobic004G020900--Sobic010G233000 Sobic002G154400 Sobic002G154400 Sobic004G020900--Sobic002G154400 Sobic007G039300--Sobic004G020900 Sobic007G039300--Sobic008G017900 Sobic007G039300--Sobic002G154400 Sobic007G039300--Sobic002G263700 Sobic004G350200 Sobic004G350200 Sobic007G039300--Sobic004G350200 Sobic003G124600 Sobic003G124600 Sobic007G039300--Sobic003G124600 Sobic007G039300--Sobic010G269300 Sobic003G113300 Sobic003G113300 Sobic007G039300--Sobic003G113300 Sobic003G130900 Sobic003G130900 Sobic007G039300--Sobic003G130900 Sobic009G190200 Sobic009G190200 Sobic004G043750--Sobic009G190200 Sobic006G280100 Sobic006G280100 Sobic004G043750--Sobic006G280100 Sobic009G259900 Sobic009G259900 Sobic004G043750--Sobic009G259900 Sobic010G236200 Sobic010G236200 Sobic004G043750--Sobic010G236200 Sobic001G395200 Sobic001G395200 Sobic004G043750--Sobic001G395200 Sobic004G111000 Sobic004G111000 Sobic004G043750--Sobic004G111000 Sobic004G043750--Sobic010G269300 Sobic007G125700 Sobic007G125700 Sobic004G043750--Sobic007G125700 Sobic004G043750--Sobic010G233000 Sobic008G017900--Sobic004G020900 Sobic002G180900 Sobic002G180900 Sobic008G017900--Sobic002G180900 Sobic008G017900--Sobic007G039300 Sobic008G017900--Sobic009G190200 Sobic008G017900--Sobic002G263700 Sobic009G069200 Sobic009G069200 Sobic008G017900--Sobic009G069200 Sobic008G017900--Sobic002G154400 Sobic006G191200 Sobic006G191200 Sobic008G017900--Sobic006G191200 Sobic008G017900--Sobic003G124600 Sobic009G032200--Sobic010G236200 Sobic009G032200--Sobic010G233000 Sobic009G032200--Sobic010G269300 Sobic009G032200--Sobic004G043750 Sobic008G057000 Sobic008G057000 Sobic009G032200--Sobic008G057000 Sobic009G257500 Sobic009G257500 Sobic009G032200--Sobic009G257500 Sobic003G221500 Sobic003G221500 Sobic009G032200--Sobic003G221500 Sobic010G215900 Sobic010G215900 Sobic009G032200--Sobic010G215900 Sobic001G135500 Sobic001G135500 Sobic009G032200--Sobic001G135500 Sobic010G269300--Sobic007G125700 Sobic002G430900 Sobic002G430900 Sobic010G269300--Sobic002G430900 Sobic010G269300--Sobic002G263700 Sobic001G123600 Sobic001G123600 Sobic010G269300--Sobic001G123600 Sobic003G360300 Sobic003G360300 Sobic010G269300--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic010G269300--Sobic008G080500 Sobic010G269300--Sobic010G236200 Sobic010G279900 Sobic010G279900 Sobic010G269300--Sobic010G279900 Sobic010G269300--Sobic009G032200 Sobic001G484200 Sobic001G484200 Sobic009G122800--Sobic001G484200 Sobic009G122800--Sobic004G020900 Sobic009G122800--Sobic008G057000 Sobic002G148400 Sobic002G148400 Sobic009G122800--Sobic002G148400 Sobic009G122800--Sobic004G043750 Sobic006G126600 Sobic006G126600 Sobic009G122800--Sobic006G126600 Sobic004G049700 Sobic004G049700 Sobic009G122800--Sobic004G049700 Sobic009G122800--Sobic009G032200 Sobic009G122800--Sobic009G257500 Sobic002G263700--Sobic010G269300 Sobic004G141800 Sobic004G141800 Sobic002G263700--Sobic004G141800 Sobic004G285000 Sobic004G285000 Sobic002G263700--Sobic004G285000 Sobic002G263700--Sobic004G111000 Sobic002G063900 Sobic002G063900 Sobic002G263700--Sobic002G063900 Sobic002G263700--Sobic006G280100 Sobic006G245900 Sobic006G245900 Sobic002G263700--Sobic006G245900 Sobic003G016500 Sobic003G016500 Sobic002G263700--Sobic003G016500 Sobic004G309900 Sobic004G309900 Sobic002G263700--Sobic004G309900 Sobic010G233000--Sobic009G032200 Sobic004G006600 Sobic004G006600 Sobic010G233000--Sobic004G006600 Sobic010G233000--Sobic004G043750 Sobic010G233000--Sobic001G484200 Sobic004G177600 Sobic004G177600 Sobic010G233000--Sobic004G177600 Sobic010G233000--Sobic010G236200 Sobic010G233000--Sobic008G057000 Sobic010G233000--Sobic010G215900 Sobic010G233000--Sobic003G221500 Sobic009G042100 Sobic009G042100 Sobic002G154400--Sobic009G042100 Sobic002G154400--Sobic007G039300 Sobic007G053700 Sobic007G053700 Sobic002G154400--Sobic007G053700 Sobic003G349000 Sobic003G349000 Sobic002G154400--Sobic003G349000 Sobic010G240800 Sobic010G240800 Sobic002G154400--Sobic010G240800 Sobic002G154400--Sobic004G020900 Sobic002G154400--Sobic009G032200 Sobic002G154400--Sobic008G017900 Sobic002G154400--Sobic009G069200
Octagon: transcription factors


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